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Report for CCDS45088.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45088.1 Public Homo sapiens 14 RABGGTA 24 110 108 CCDS HistoryNCBI Gene:5875Re-query CCDS DB by CCDS ID:45088.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45088.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000216840.11 ENSP00000216840.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000216840.11Link to Ensembl Protein Viewer:ENSP00000216840.6Re-query CCDS DB by Nucleotide ID:ENST00000216840Re-query CCDS DB by Protein ID:ENSP00000216840
Original member Current member EBI ENST00000399409.7 ENSP00000382341.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000399409.7Link to Ensembl Protein Viewer:ENSP00000382341.3Re-query CCDS DB by Nucleotide ID:ENST00000399409Re-query CCDS DB by Protein ID:ENSP00000382341
Original member Current member NCBI NM_004581.5 NP_004572.3 Accepted alive Link to Nucleotide Sequence:NM_004581.5Link to Protein Sequence:NP_004572.3Re-query CCDS DB by Nucleotide ID:NM_004581Re-query CCDS DB by Protein ID:NP_004572Link to BLAST:NP_004572.3
Original member Current member NCBI NM_182836.3 NP_878256.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_182836.3Link to Protein Sequence:NP_878256.1Re-query CCDS DB by Nucleotide ID:NM_182836Re-query CCDS DB by Protein ID:NP_878256Link to BLAST:NP_878256.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004572.3 567 Q92696 567 100% 0 0
NP_878256.1 567 Q92696 567 100% 0 0

Chromosomal Locations for CCDS 45088.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 24265615 24265763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24266430 24266517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24266776 24266889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24267660 24267776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24267870 24267958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24268110 24268198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24268369 24268420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24268514 24268619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24268725 24268826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24268911 24268993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24269080 24269163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24269491 24269694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24269953 24270140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24270334 24270458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24270837 24270947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24271113 24271115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1704 nt):
ATGCACGGACGCCTGAAGGTGAAGACGTCAGAAGAGCAGGCGGAGGCCAAAAGGCTAGAGCGAGAGCAGA
AGCTGAAGCTATACCAGTCAGCCACCCAGGCCGTATTCCAGAAGCGCCAGGCTGGTGAGCTGGATGAGTC
CGTGCTGGAACTGACAAGCCAGATTCTGGGAGCCAACCCTGATTTTGCCACCCTCTGGAACTGCCGACGA
GAGGTGCTCCAGCAGCTGGAGACTCAGAAGTCTCCTGAAGAGTTGGCTGCTCTGGTGAAGGCAGAACTGG
GCTTCCTGGAGAGCTGCCTGCGGGTGAACCCCAAGTCTTATGGTACCTGGCACCACCGATGCTGGCTGCT
AGGCCGCCTGCCTGAGCCCAACTGGACCCGAGAGCTGGAGCTCTGTGCCCGTTTCCTGGAGGTGGATGAG
CGGAACTTTCACTGCTGGGACTATCGGCGGTTTGTGGCCACACAGGCAGCCGTGCCCCCTGCAGAAGAGC
TAGCCTTCACTGACAGCCTCATCACCCGAAACTTCTCCAACTACTCTTCCTGGCATTACCGCTCCTGTCT
CTTGCCCCAGCTGCACCCCCAGCCGGATTCTGGACCACAGGGGCGCCTCCCTGAGGATGTGCTGCTCAAA
GAGCTGGAGCTGGTGCAGAATGCCTTCTTCACTGACCCCAATGACCAGAGTGCCTGGTTTTATCACCGTT
GGCTCCTAGGCCGAGCTGACCCCCAGGATGCACTGCGCTGCCTGCATGTGAGCCGGGACGAGGCCTGTCT
GACTGTCTCCTTCTCTCGGCCCCTCTTAGTGGGCTCCAGGATGGAGATCTTGCTGCTCATGGTTGATGAT
TCTCCCCTGATTGTGGAGTGGAGGACCCCAGATGGCAGGAACCGGCCCAGCCATGTCTGGCTCTGTGACC
TGCCTGCTGCCTCCCTCAACGACCAGTTGCCCCAACATACATTTCGCGTCATTTGGACAGCAGGCGATGT
CCAGAAAGAATGCGTGCTTTTAAAAGGCCGCCAGGAGGGCTGGTGCCGGGACTCCACGACAGACGAGCAG
CTATTCAGGTGTGAGCTGTCAGTGGAGAAGTCCACAGTGCTGCAGTCTGAGCTGGAATCCTGTAAGGAGC
TGCAGGAGCTGGAGCCTGAGAATAAATGGTGCCTGCTTACCATCATCCTGCTGATGCGGGCACTGGACCC
CCTGCTGTATGAGAAGGAGACCCTGCAGTACTTCCAGACCCTCAAGGCCGTGGACCCCATGCGGGCAACG
TATCTGGATGACCTGCGCAGCAAGTTCTTGCTGGAGAATAGCGTGCTCAAGATGGAGTATGCCGAGGTGC
GTGTGCTGCACCTGGCTCACAAGGATCTGACAGTGCTCTGCCATCTGGAACAGCTGCTCTTGGTCACCCA
TCTTGACTTGTCACACAATCGCCTCCGAACCCTGCCACCTGCACTGGCTGCCCTGCGCTGCCTTGAGGTG
CTGCAGGCCAGTGATAATGCCATAGAGTCCCTGGACGGCGTCACCAACCTACCCCGGCTGCAGGAGCTGC
TACTGTGCAACAACCGCCTCCAGCAGCCTGCAGTGCTCCAGCCTCTTGCCTCCTGCCCCAGGCTGGTCCT
CCTCAACCTGCAGGGTAACCCGCTGTGCCAAGCGGTGGGCATCTTGGAGCAACTGGCTGAACTGCTGCCT
TCAGTTAGCAGCGTCCTCACCTAA

Translation (567 aa):
MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRR
EVLQQLETQKSPEELAALVKAELGFLESCLRVNPKSYGTWHHRCWLLGRLPEPNWTRELELCARFLEVDE
RNFHCWDYRRFVATQAAVPPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEDVLLK
ELELVQNAFFTDPNDQSAWFYHRWLLGRADPQDALRCLHVSRDEACLTVSFSRPLLVGSRMEILLLMVDD
SPLIVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTAGDVQKECVLLKGRQEGWCRDSTTDEQ
LFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFQTLKAVDPMRAT
YLDDLRSKFLLENSVLKMEYAEVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRTLPPALAALRCLEV
LQASDNAIESLDGVTNLPRLQELLLCNNRLQQPAVLQPLASCPRLVLLNLQGNPLCQAVGILEQLAELLP
SVSSVLT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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