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Report for CCDS7392.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7392.1 Public Homo sapiens 10 ACTA2 24 110 108 CCDS HistoryNCBI Gene:59Re-query CCDS DB by CCDS ID:7392.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7392.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000224784.10 ENSP00000224784.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000224784.10Link to Ensembl Protein Viewer:ENSP00000224784.6Re-query CCDS DB by Nucleotide ID:ENST00000224784Re-query CCDS DB by Protein ID:ENSP00000224784
Original member NCBI NM_001141945.2 NP_001135417.1 Updated not alive Link to Nucleotide Sequence:NM_001141945.2Link to Protein Sequence:NP_001135417.1Re-query CCDS DB by Nucleotide ID:NM_001141945Re-query CCDS DB by Protein ID:NP_001135417
Current member NCBI NM_001141945.3 NP_001135417.1 Accepted alive Link to Nucleotide Sequence:NM_001141945.3Link to Protein Sequence:NP_001135417.1Re-query CCDS DB by Nucleotide ID:NM_001141945Re-query CCDS DB by Protein ID:NP_001135417Link to BLAST:NP_001135417.1
Original member NCBI NM_001320855.1 NP_001307784.1 Updated not alive Link to Nucleotide Sequence:NM_001320855.1Link to Protein Sequence:NP_001307784.1Re-query CCDS DB by Nucleotide ID:NM_001320855Re-query CCDS DB by Protein ID:NP_001307784
Current member NCBI NM_001320855.2 NP_001307784.1 Accepted alive Link to Nucleotide Sequence:NM_001320855.2Link to Protein Sequence:NP_001307784.1Re-query CCDS DB by Nucleotide ID:NM_001320855Re-query CCDS DB by Protein ID:NP_001307784Link to BLAST:NP_001307784.1
Original member Current member NCBI NM_001613.4 NP_001604.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001613.4Link to Protein Sequence:NP_001604.1Re-query CCDS DB by Nucleotide ID:NM_001613Re-query CCDS DB by Protein ID:NP_001604Link to BLAST:NP_001604.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001135417.1 377 P62736 377 100% 0 0
NP_001307784.1 377 P62736 377 100% 0 0
NP_001604.1 377 P62736 377 100% 0 0

Chromosomal Locations for CCDS 7392.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 88935223 88935366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88938061 88938242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88939507 88939698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88941229 88941390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88941785 88941869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88943797 88943907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88947258 88947386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88948802 88948930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1134 nt):
ATGTGTGAAGAAGAGGACAGCACTGCCTTGGTGTGTGACAATGGCTCTGGGCTCTGTAAGGCCGGCTTTG
CTGGGGACGATGCTCCCAGGGCTGTTTTCCCATCCATTGTGGGACGTCCCAGACATCAGGGGGTGATGGT
GGGAATGGGACAAAAAGACAGCTACGTGGGTGACGAAGCACAGAGCAAAAGAGGAATCCTGACCCTGAAG
TACCCGATAGAACATGGCATCATCACCAACTGGGACGACATGGAAAAGATCTGGCACCACTCTTTCTACA
ATGAGCTTCGTGTTGCCCCTGAAGAGCATCCCACCCTGCTCACGGAGGCACCCCTGAACCCCAAGGCCAA
CCGGGAGAAAATGACTCAAATTATGTTTGAGACTTTCAATGTCCCAGCCATGTATGTGGCTATCCAGGCG
GTGCTGTCTCTCTATGCCTCTGGACGCACAACTGGCATCGTGCTGGACTCTGGAGATGGTGTCACCCACA
ATGTCCCCATCTATGAGGGCTATGCCTTGCCCCATGCCATCATGCGTCTGGATCTGGCTGGCCGAGATCT
CACTGACTACCTCATGAAGATCCTGACTGAGCGTGGCTATTCCTTCGTTACTACTGCTGAGCGTGAGATT
GTCCGGGACATCAAGGAGAAACTGTGTTATGTAGCTCTGGACTTTGAAAATGAGATGGCCACTGCCGCAT
CCTCATCCTCCCTTGAGAAGAGTTACGAGTTGCCTGATGGGCAAGTGATCACCATCGGAAATGAACGTTT
CCGCTGCCCAGAGACCCTGTTCCAGCCATCCTTCATCGGGATGGAGTCTGCTGGCATCCATGAAACCACC
TACAACAGCATCATGAAGTGTGATATTGACATCAGGAAGGACCTCTATGCTAACAATGTCCTATCAGGGG
GCACCACTATGTACCCTGGCATTGCCGACCGAATGCAGAAGGAGATCACGGCCCTAGCACCCAGCACCAT
GAAGATCAAGATCATTGCCCCTCCGGAGCGCAAATACTCTGTCTGGATCGGTGGCTCCATCCTGGCCTCT
CTGTCCACCTTCCAGCAGATGTGGATCAGCAAACAGGAATACGATGAAGCCGGGCCTTCCATTGTCCACC
GCAAATGCTTCTAA

Translation (377 aa):
MCEEEDSTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLK
YPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQA
VLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREI
VRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETT
YNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILAS
LSTFQQMWISKQEYDEAGPSIVHRKCF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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