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Report for CCDS41577.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41577.1 Public Homo sapiens 10 NPS 24 110 108 CCDS HistoryNCBI Gene:594857Re-query CCDS DB by CCDS ID:41577.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41577.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000398023.3 ENSP00000381105.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000398023.3Link to Ensembl Protein Viewer:ENSP00000381105.2Re-query CCDS DB by Nucleotide ID:ENST00000398023Re-query CCDS DB by Protein ID:ENSP00000381105
Original member Current member NCBI NM_001030013.2 NP_001025184.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001030013.2Link to Protein Sequence:NP_001025184.1Re-query CCDS DB by Nucleotide ID:NM_001030013Re-query CCDS DB by Protein ID:NP_001025184Link to BLAST:NP_001025184.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001025184.1 89 P0C0P6 89 100% 0 0

Chromosomal Locations for CCDS 41577.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 127549369 127549376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127549489 127549570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127552460 127552639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (270 nt):
ATGATTAGCTCAGTAAAACTCAATCTCATCCTAGTTCTGTCGCTGTCCACAATGCATGTGTTTTGGTGTT
ATCCAGTTCCATCTTCTAAGGTGTCTGGAAAATCTGATTACTTTCTCATTCTGCTGAACAGCTGCCCAAC
CAGATTGGACAGGAGCAAAGAACTAGCTTTTCTAAAGCCAATTTTGGAGAAGATGTTTGTGAAAAGGTCC
TTTCGCAATGGAGTTGGCACAGGGATGAAAAAAACTTCCTTTCAAAGAGCAAAATCATGA

Translation (89 aa):
MISSVKLNLILVLSLSTMHVFWCYPVPSSKVSGKSDYFLILLNSCPTRLDRSKELAFLKPILEKMFVKRS
FRNGVGTGMKKTSFQRAKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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