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Report for CCDS13220.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13220.1 Public Homo sapiens 20 SNTA1 24 110 108 CCDS HistoryNCBI Gene:6640Re-query CCDS DB by CCDS ID:13220.1See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13220.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000217381.3 ENSP00000217381.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000217381.3Link to Ensembl Protein Viewer:ENSP00000217381.2Re-query CCDS DB by Nucleotide ID:ENST00000217381Re-query CCDS DB by Protein ID:ENSP00000217381
Original member Current member NCBI NM_003098.3 NP_003089.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003098.3Link to Protein Sequence:NP_003089.1Re-query CCDS DB by Nucleotide ID:NM_003098Re-query CCDS DB by Protein ID:NP_003089Link to BLAST:NP_003089.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003089.1 505 Q13424-1 505 100% 0 0

Chromosomal Locations for CCDS 13220.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 33408507 33408599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33408701 33408888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33410135 33410331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33412296 33412426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33412575 33412782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33417719 33417923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33438841 33439026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33443311 33443620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1518 nt):
ATGGCGTCCGGCAGGCGCGCCCCGCGCACCGGGCTGCTGGAGCTGCGCGCCGGGGCGGGCTCGGGGGCCG
GCGGCGAGCGATGGCAGCGGGTGCTGCTGAGTCTGGCGGAGGACGTGCTGACCGTGAGCCCCGCCGACGG
CGACCCTGGTCCCGAGCCCGGCGCTCCGCGGGAGCAGGAGCCCGCGCAGCTCAACGGCGCCGCGGAGCCG
GGCGCCGGGCCCCCGCAGCTGCCAGAGGCGCTACTGCTCCAGCGGCGCCGCGTGACGGTGCGCAAGGCCG
ACGCCGGTGGGCTGGGCATCAGCATCAAAGGCGGCCGGGAGAACAAGATGCCTATTCTCATTTCCAAGAT
CTTCAAGGGATTGGCAGCTGACCAGACAGAGGCCCTTTTTGTGGGGGATGCCATCCTGTCTGTGAATGGG
GAAGACTTGTCCTCTGCTACCCATGATGAGGCGGTGCAGGTCCTCAAGAAGACAGGCAAGGAGGTGGTGC
TGGAGGTCAAGTATATGAAGGACGTCTCACCGTATTTCAAGAACTCTACTGGTGGGACCTCGGTCGGCTG
GGACTCACCTCCTGCCTCACCCCTTCAGCGGCAGCCTTCCTCCCCTGGCCCCACACCCCGGAACTTCAGC
GAGGCCAAACACATGTCCTTGAAGATGGCATATGTCTCGAAGAGGTGCACCCCCAATGACCCGGAGCCCA
GGTATCTGGAGATCTGCTCGGCAGATGGTCAAGACACCCTCTTCCTGAGGGCCAAGGATGAGGCTAGTGC
GAGGTCGTGGGCGACTGCCATCCAAGCCCAGGTCAATACTCTGACGCCGCGGGTCAAGGATGAGCTGCAG
GCACTGTTGGCAGCCACCAGCACAGCTGGGAGCCAGGACATCAAGCAGATTGGCTGGCTAACTGAGCAGC
TGCCCAGTGGGGGCACAGCCCCCACCCTGGCCCTGCTAACTGAAAAGGAACTGCTCCTCTACTTGTCTCT
CCCCGAGACCCGCGAGGCCCTGAGCCGGCCAGCCCGTACTGCCCCACTCATCGCCACCAGACTGGTGCAC
TCAGGCCCCTCCAAGGGCTCAGTGCCCTACGATGCAGAGCTCTCTTTTGCCCTGCGCACGGGCACGCGTC
ACGGTGTGGACACTCACCTGTTCAGCGTGGAGTCACCGCAGGAGCTGGCTGCCTGGACCCGCCAGCTTGT
GGATGGCTGTCACCGGGCCGCCGAGGGTGTGCAGGAGGTGTCTACAGCCTGCACGTGGAATGGGCGTCCC
TGCAGCCTGTCTGTGCACATCGACAAGGGCTTCACACTGTGGGCGGCTGAGCCAGGTGCAGCCCGAGCTG
TGCTCCTGCGACAGCCCTTCGAGAAGCTGCAGATGTCTTCAGATGACGGTGCCAGTCTCCTTTTCCTGGA
TTTTGGAGGTGCTGAAGGCGAGATCCAGCTGGACCTGCACTCGTGTCCCAAAACCATAGTCTTCATCATC
CACTCCTTCCTGTCGGCCAAAGTCACCCGCCTCGGGCTGTTGGCCTAG

Translation (505 aa):
MASGRRAPRTGLLELRAGAGSGAGGERWQRVLLSLAEDVLTVSPADGDPGPEPGAPREQEPAQLNGAAEP
GAGPPQLPEALLLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNG
EDLSSATHDEAVQVLKKTGKEVVLEVKYMKDVSPYFKNSTGGTSVGWDSPPASPLQRQPSSPGPTPRNFS
EAKHMSLKMAYVSKRCTPNDPEPRYLEICSADGQDTLFLRAKDEASARSWATAIQAQVNTLTPRVKDELQ
ALLAATSTAGSQDIKQIGWLTEQLPSGGTAPTLALLTEKELLLYLSLPETREALSRPARTAPLIATRLVH
SGPSKGSVPYDAELSFALRTGTRHGVDTHLFSVESPQELAAWTRQLVDGCHRAAEGVQEVSTACTWNGRP
CSLSVHIDKGFTLWAAEPGAARAVLLRQPFEKLQMSSDDGASLLFLDFGGAEGEIQLDLHSCPKTIVFII
HSFLSAKVTRLGLLA


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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