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Report for CCDS12995.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12995.1 Public Homo sapiens 20 SOX12 24 110 108 CCDS HistoryNCBI Gene:6666Re-query CCDS DB by CCDS ID:12995.1See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12995.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000342665.5 ENSP00000347646.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000342665.5Link to Ensembl Protein Viewer:ENSP00000347646.1Re-query CCDS DB by Nucleotide ID:ENST00000342665Re-query CCDS DB by Protein ID:ENSP00000347646
Original member Current member NCBI NM_006943.4 NP_008874.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006943.4Link to Protein Sequence:NP_008874.2Re-query CCDS DB by Nucleotide ID:NM_006943Re-query CCDS DB by Protein ID:NP_008874Link to BLAST:NP_008874.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_008874.2 315 O15370 315 100% 0 0

Chromosomal Locations for CCDS 12995.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 325925 326872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (948 nt):
ATGGTGCAGCAGCGGGGCGCGAGGGCCAAGCGGGACGGCGGGCCGCCGCCCCCGGGACCCGGGCCGGCCG
AGGAGGGGGCGCGCGAGCCCGGCTGGTGCAAGACCCCGAGCGGCCACATCAAGAGGCCGATGAACGCATT
CATGGTGTGGTCGCAGCACGAACGGCGGAAGATCATGGACCAGTGGCCCGACATGCACAACGCCGAGATC
TCCAAGCGCCTGGGCCGCCGCTGGCAGCTGCTGCAGGACTCGGAGAAGATCCCGTTCGTGCGGGAGGCGG
AGCGGCTGCGGCTCAAGCACATGGCGGATTACCCGGACTACAAGTACCGGCCGCGCAAAAAGAGCAAGGG
GGCGCCCGCCAAGGCGCGGCCCCGCCCCCCCGGTGGTAGCGGTGGCGGCAGCCGGCTCAAGCCCGGGCCG
CAGCTGCCTGGCCGCGGGGGCCGCCGAGCAGCGGGAGGGCCTTTGGGGGGCGGGGCGGCGGCGCCCGAGG
ACGACGATGAAGACGACGACGAGGAGCTGCTGGAAGTGCGCCTGGTCGAGACCCCGGGGCGGGAGCTGTG
GAGGATGGTCCCGGCGGGACGGGCCGCTCGGGGACAAGCGGAGCGCGCCCAAGGGCCGTCGGGCGAGGGG
GCGGCCGCCGCCGCCGCCGCCTCCCCGACACCGTCGGAGGACGAGGAGCCGGAGGAAGAGGAGGAGGAGG
CGGCAGCGGCTGAGGAAGGTGAAGAGGAGACGGTGGCGTCGGGGGAGGAGTCGCTGGGCTTTCTGTCCAG
GCTGCCCCCTGGCCCGGCCGGCCTGGACTGCAGCGCCCTGGATCGCGACCCGGACCTGCAGCCTCCCTCG
GGCACGTCGCACTTCGAGTTCCCGGACTACTGCACCCCCGAGGTTACCGAGATGATCGCGGGGGACTGGC
GCCCGTCTAGCATCGCAGACCTGGTTTTCACCTACTGA

Translation (315 aa):
MVQQRGARAKRDGGPPPPGPGPAEEGAREPGWCKTPSGHIKRPMNAFMVWSQHERRKIMDQWPDMHNAEI
SKRLGRRWQLLQDSEKIPFVREAERLRLKHMADYPDYKYRPRKKSKGAPAKARPRPPGGSGGGSRLKPGP
QLPGRGGRRAAGGPLGGGAAAPEDDDEDDDEELLEVRLVETPGRELWRMVPAGRAARGQAERAQGPSGEG
AAAAAAASPTPSEDEEPEEEEEEAAAAEEGEEETVASGEESLGFLSRLPPGPAGLDCSALDRDPDLQPPS
GTSHFEFPDYCTPEVTEMIAGDWRPSSIADLVFTY


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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