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Report for CCDS25567.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25567.1 Public Mus musculus 11 Pitpnc1 23 108 98 CCDS HistoryNCBI Gene:71795Re-query CCDS DB by CCDS ID:25567.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25567.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103064.9 ENSMUSP00000099353.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103064.9Link to Ensembl Protein Viewer:ENSMUSP00000099353.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000103064Re-query CCDS DB by Protein ID:ENSMUSP00000099353
Original member Current member NCBI NM_145823.2 NP_665822.1 Accepted alive Link to Nucleotide Sequence:NM_145823.2Link to Protein Sequence:NP_665822.1Re-query CCDS DB by Nucleotide ID:NM_145823Re-query CCDS DB by Protein ID:NP_665822Link to BLAST:NP_665822.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_665822.1 268 Q8K4R4-2 268 100% 0 0

Chromosomal Locations for CCDS 25567.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 107212653 107212658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 107216678 107216796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 107226231 107226294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 107234347 107234502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 107252022 107252117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 107296199 107296270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 107320793 107320800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 107321587 107321675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 107337412 107337560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 107469891 107469938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (807 nt):
ATGCTGCTCAAGGAGTACCGAATCTGCATGCCGCTCACCGTGGACGAGTACAAAATCGGACAGCTGTATA
TGATCAGCAAACACAGCCATGAGCAGAGTGACCGGGGAGAAGGGGTAGAGGTCGTGCAGAACGAGCCCTT
TGAGGACCCTCACCATGGCAACGGGCAGTTCACTGAGAAGCGAGTGTATCTCAACAGCAAGCTGCCTAGT
TGGGCCAGAGCTGTTGTTCCCAAAATATTTTATGTGACCGAGAAGGCGTGGAATTATTACCCATACACCA
TCACAGAATACACTTGTTCCTTCCTGCCGAAATTCTCCATCCACATAGAAACCAAGTATGAAGACAACAA
GGGAAGCAACGATAGTATTTTTGACAGTGAAGCCAAAGACCTCGAGAGAGAAGTGTGCTTCATCGATATC
GCCTGTGATGAAATTCCAGAACGCTACTACAAAGAGTCTGAGGATCCTAAACACTTCAAGTCTGAGAAGA
CAGGCCGAGGGCAGCTAAGAGAAGGCTGGCGAGACAACCATCAACCCATCATGTGCTCCTACAAGCTGGT
CACCGTCAAGTTCGAGGTGTGGGGCCTTCAGACCCGAGTGGAACAATTTGTGCACAAGGTGGTCCGAGAC
ATCTTGCTGATTGGACACAGACAGGCCTTTGCGTGGGTTGATGAGTGGTACGATATGACAATGGATGATG
TTCGGGAATACGAGAAAAACATGCATGAACAAACCAACATAAAAGTTTGCAATCAGCACTCCTCCACTGT
GGATGACATAGAGAGCCATGCACAGACCAGTACATGA

Translation (268 aa):
MLLKEYRICMPLTVDEYKIGQLYMISKHSHEQSDRGEGVEVVQNEPFEDPHHGNGQFTEKRVYLNSKLPS
WARAVVPKIFYVTEKAWNYYPYTITEYTCSFLPKFSIHIETKYEDNKGSNDSIFDSEAKDLEREVCFIDI
ACDEIPERYYKESEDPKHFKSEKTGRGQLREGWRDNHQPIMCSYKLVTVKFEVWGLQTRVEQFVHKVVRD
ILLIGHRQAFAWVDEWYDMTMDDVREYEKNMHEQTNIKVCNQHSSTVDDIESHAQTST


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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