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Report for CCDS8027.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8027.1 Public Homo sapiens 11 INTS5 24 110 108 CCDS HistoryNCBI Gene:80789Re-query CCDS DB by CCDS ID:8027.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8027.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000330574.2 ENSP00000327889.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000330574.2Link to Ensembl Protein Viewer:ENSP00000327889.2Re-query CCDS DB by Nucleotide ID:ENST00000330574Re-query CCDS DB by Protein ID:ENSP00000327889
Original member Current member NCBI NM_030628.2 NP_085131.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_030628.2Link to Protein Sequence:NP_085131.1Re-query CCDS DB by Nucleotide ID:NM_030628Re-query CCDS DB by Protein ID:NP_085131Link to BLAST:NP_085131.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_085131.1 1019 Q6P9B9 1019 100% 0 0

Chromosomal Locations for CCDS 8027.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 62647020 62649999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62653170 62653249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3060 nt):
ATGTCCGCGCTGTGCGACCCTCCCGGGGCCCCAGGGCCACCTGGGCCTGCCCCGGCCACCCACGGTCCCG
CGCCTCTCAGTGCTCAGGAGCTGTCCCAGGAAATCAAGGCTTTTCTGACTGGCGTAGACCCCATTCTGGG
CCACCAACTCTCAGCCCGGGAACATGCTCGCTGTGGTCTTCTCCTGCTCCGTTCTTTGCCACCTGCTCGG
GCTGCTGTGCTTGACCACTTGAGAGGTGTCTTTGATGAGAGTGTCCGGGCCCACCTGGCTGCCCTGGATG
AAACCCCTGTGGCTGGTCCACCTCACCTCCGTCCACCTCCACCCTCTCATGTCCCTGCTGGTGGACCTGG
TCTAGAGGATGTGGTTCAGGAAGTGCAGCAGGTGCTGTCTGAGTTTATCCGGGCCAACCCAAAGGCCTGG
GCACCTGTGATTAGTGCATGGTCCATTGACCTCATGGGGCAACTGAGCAGCACGTACTCAGGCCAGCACC
AGCGTGTTCCCCACGCTACTGGCGCTCTTAATGAACTGCTACAGCTGTGGATGGGTTGTAGGGCCACGCG
TACATTAATGGACATCTATGTGCAGTGCCTCTCGGCTCTCATTGGTAGCTGCCCAGATGCGTGTGTGGAT
GCCTTGCTGGATACCTCTGTTCAGCATTCTCCACACTTTGACTGGGTTGTGGCACATATTGGCTCCTCTT
TTCCTGGCACCATCATTTCCCGGGTTCTCTCCTGTGGCCTTAAGGACTTTTGTGTCCATGGTGGGGCTGG
AGGTGGAGCTGGCAGTAGTGGTGGAAGCTCTTCTCAGACCCCCTCTACAGACCCCTTCCCTGGATCTCCT
GCCATTCCTGCGGAGAAACGGGTGCCCAAGATTGCCTCAGTTGTAGGCATCCTAGGTCACCTGGCCTCCC
GCCACGGAGATAGCATCCGACGGGAGCTCCTGCGAATGTTCCATGATAGCCTGGCAGGGGGATCTGGAGG
CCGCAGTGGGGACCCCTCCCTTCAGGCCACGGTTCCGTTCCTACTGCAGCTGGCAGTCATGTCACCAGCT
TTGCTGGGCACTGTCTCTGGAGAGCTTGTGGATTGCCTCAAGCCCCCAGCTGTGCTGAGCCAGCTGCAGC
AACACCTTCAAGGATTCCCCCGAGAGGAGCTGGACAACATGTTGAACCTGGCTGTGCACCTGGTGAGCCA
GGCCTCTGGGGCAGGTGCCTACCGCTTGCTGCAGTTCCTGGTGGACACAGCTATGCCTGCTTCGGTCATT
ACCACCCAGGGCCTGGCTGTGCCAGACACCGTGCGTGAGGCTTGTGACCGGCTAATCCAGCTGCTGCTGC
TGCACCTGCAAAAACTGGTTCATCACCGGGGAGGGTCTCCTGGGGAAGGGGTGCTAGGCCCGCCCCCACC
TCCCCGCTTGGTGCCCTTTTTAGATGCGCTCAAAAACCATGTTGGAGAGCTGTGTGGAGAGACGTTACGA
TTGGAACGGAAGCGCTTCCTCTGGCAGCACCAGCTCTTGGGCCTGCTGTCTGTCTATACCCGGCCTAGCT
GTGGACCTGAGGCCTTGGGCCATCTGCTGAGCCGAGCCCGAAGCCCTGAAGAGTTGAGTTTGGCCACCCA
GTTATATGCAGGGCTAGTGGTCAGCCTCTCTGGCCTCCTGCCCCTGGCTTTCCGAAGCTGTCTGGCTCGG
GTGCATGCAGGGACATTACAGCCTCCCTTCACGGCCCGGTTCCTGCGCAACTTGGCACTGCTAGTAGGGT
GGGAACAGCAGGGTGGCGAGGGCCCTGCAGCCCTAGGGGCGCACTTTGGGGAATCTGCCTCAGCCCATCT
GTCTGACCTGGCTCCTCTCCTGCTACATCCTGAGGAGGAAGTAGCTGAAGCTGCTGCCTCTCTCCTGGCC
ATTTGTCCCTTTCCTTCTGAAGCCTTATCCCCCTCCCAGCTCCTGGGACTGGTAAGGGCTGGGGTGCACC
GCTTCTTTGCCTCTCTGAGGCTGCATGGACCCCCAGGTGTGGCCTCAGCCTGTCAGCTTCTCACCCGCCT
GTCTCAGACATCCCCAGCTGGGCTCAAGGCTGTCCTGCAGCTGCTGGTTGAAGGAGCCTTACATCGAGGC
AACACAGAACTGTTTGGTGGGCAAGTAGATGGGGACAATGAGACTCTCTCAGTTGTTTCAGCTTCTTTGG
CTTCTGCCTCCCTGTTGGACACTAACCGGAGGCACACTGCAGCTGTGCCAGGTCCTGGAGGGATTTGGTC
AGTTTTCCATGCTGGAGTCATCGGCCGTGGCTTAAAGCCACCCAAGTTTGTCCAGTCACGAAATCAGCAG
GAAGTGATCTATAACACCCAGAGCCTCCTCAGCCTCCTGGTTCACTGCTGCAGTGCCCCAGGGGGCACTG
AATGTGGGGAATGCTGGGGGGCACCCATCTTGAGTCCAGAGGCAGCCAAAGCAGTGGCAGTGACCTTGGT
GGAGAGTGTGTGTCCCGATGCAGCTGGTGCAGAGCTGGCCTGGCCCCCCGAGGAACACGCCCGGGCCACC
GTGGAGCGGGATCTCCGCATTGGCCGGCGCTTCCGCGAACAGCCCCTGCTCTTTGAGCTGTTAAAGCTGG
TAGCAGCTGCACCCCCAGCCCTGTGCTACTGTTCCGTGCTGCTTCGGGGGCTGCTGGCCGCCCTCTTGGG
CCATTGGGAAGCCTCTCGCCACCCTGACACGACCCACTCCCCCTGGCACCTGGAGGCATCCTGCACCTTA
GTGGCTGTCATGGCTGAGGGAAGCCTCCTGCCTCCGGCCCTGGGTAATATGCATGAAGTATTTAGCCAAC
TGGCACCTTTCGAGGTGCGTCTGCTGCTGCTCAGTGTCTGGGGTTTTCTCCGGGAGCATGGGCCCTTGCC
TCAGAAGTTCATCTTCCAATCAGAGCGGGGTCGCTTCATTCGGGACTTCTCCAGGGAGGGTGGAGGTGAG
GGTGGACCCCATCTGGCTGTGCTGCACAGTGTCCTCCACCGCAACATCGACCGCCTAGGTCTTTTCTCTG
GCCGTTTCCAGGCACCTTCACCGTCCACTCTCCTTCGACAGGGGACGTAG

Translation (1019 aa):
MSALCDPPGAPGPPGPAPATHGPAPLSAQELSQEIKAFLTGVDPILGHQLSAREHARCGLLLLRSLPPAR
AAVLDHLRGVFDESVRAHLAALDETPVAGPPHLRPPPPSHVPAGGPGLEDVVQEVQQVLSEFIRANPKAW
APVISAWSIDLMGQLSSTYSGQHQRVPHATGALNELLQLWMGCRATRTLMDIYVQCLSALIGSCPDACVD
ALLDTSVQHSPHFDWVVAHIGSSFPGTIISRVLSCGLKDFCVHGGAGGGAGSSGGSSSQTPSTDPFPGSP
AIPAEKRVPKIASVVGILGHLASRHGDSIRRELLRMFHDSLAGGSGGRSGDPSLQATVPFLLQLAVMSPA
LLGTVSGELVDCLKPPAVLSQLQQHLQGFPREELDNMLNLAVHLVSQASGAGAYRLLQFLVDTAMPASVI
TTQGLAVPDTVREACDRLIQLLLLHLQKLVHHRGGSPGEGVLGPPPPPRLVPFLDALKNHVGELCGETLR
LERKRFLWQHQLLGLLSVYTRPSCGPEALGHLLSRARSPEELSLATQLYAGLVVSLSGLLPLAFRSCLAR
VHAGTLQPPFTARFLRNLALLVGWEQQGGEGPAALGAHFGESASAHLSDLAPLLLHPEEEVAEAAASLLA
ICPFPSEALSPSQLLGLVRAGVHRFFASLRLHGPPGVASACQLLTRLSQTSPAGLKAVLQLLVEGALHRG
NTELFGGQVDGDNETLSVVSASLASASLLDTNRRHTAAVPGPGGIWSVFHAGVIGRGLKPPKFVQSRNQQ
EVIYNTQSLLSLLVHCCSAPGGTECGECWGAPILSPEAAKAVAVTLVESVCPDAAGAELAWPPEEHARAT
VERDLRIGRRFREQPLLFELLKLVAAAPPALCYCSVLLRGLLAALLGHWEASRHPDTTHSPWHLEASCTL
VAVMAEGSLLPPALGNMHEVFSQLAPFEVRLLLLSVWGFLREHGPLPQKFIFQSERGRFIRDFSREGGGE
GGPHLAVLHSVLHRNIDRLGLFSGRFQAPSPSTLLRQGT


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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