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Report for CCDS41487.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41487.1 Public Homo sapiens 10 TAF3 24 110 108 CCDS HistoryNCBI Gene:83860Re-query CCDS DB by CCDS ID:41487.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41487.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000344293.6 ENSP00000340271.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000344293.6Link to Ensembl Protein Viewer:ENSP00000340271.5Re-query CCDS DB by Nucleotide ID:ENST00000344293Re-query CCDS DB by Protein ID:ENSP00000340271
Original member Current member NCBI NM_031923.4 NP_114129.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_031923.4Link to Protein Sequence:NP_114129.1Re-query CCDS DB by Nucleotide ID:NM_031923Re-query CCDS DB by Protein ID:NP_114129Link to BLAST:NP_114129.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_114129.1 929 Q5VWG9 929 100% 0 0

Chromosomal Locations for CCDS 41487.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 7818710 7818875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7824318 7824560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7963920 7965742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7977241 7977323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 8009078 8009330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 8013731 8013837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 8014637 8014751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2790 nt):
ATGTGCGAGAGTTACTCCAGGTCGTTGTTGAGGGTCTCGGTGGCGCAGATCTGCCAGGCGCTGGGCTGGG
ACTCGGTGCAGCTCAGCGCCTGCCACCTCCTCACGGACGTGCTGCAGCGCTATCTGCAGCAGCTGGGCCG
GGGCTGCCATCGGTACTCTGAGCTCTATGGCCGAACAGACCCAATTTTGGATGATGTTGGTGAAGCTTTC
CAGCTGATGGGGGTTAGTCTACATGAACTAGAAGACTATATTCACAACATTGAGCCTGTCACCTTCCCAC
ACCAAATTCCGTCATTTCCTGTTAGCAAGAACAATGTACTTCAGTTTCCTCAACCTGGAAGTAAAGATGC
AGAGGAAAGAAAAGAATACATTCCTGATTACCTGCCACCCATTGTGTCTTCTCAAGAAGAAGAAGAAGAA
GAGCAGGTGCCCACTGATGGAGGCACATCAGCAGAAGCCATGCAGGTTCCCTTGGAAGAAGATGATGAAT
TGGAGGAGGAAGAAATTATTAATGATGAGAATTTCCTGGGCAAGAGACCACTGGATAGTCCTGAAGCTGA
AGAACTGCCAGCCATGAAGCGGCCTCGGCTATTAAGCACTAAAGGGGACACGCTAGATGTTGTGTTATTG
GAAGCTCGAGAGCCACTCAGCTCAATAAATACTCAAAAGATCCCACCAATGCTTTCTCCAGTCCATGTAC
AGGACAGTACAGACTTGGCACCTCCCTCACCCGAGCCGCCAATGTTGGCTCCAGTTGCAAAATCACAAAT
GCCAACTGCAAAACCATTAGAAACAAAGTCATTTACACCTAAAACAAAGACTAAAACTAGCTCTCCAGGA
CAGAAGACTAAATCACCTAAAACCGCCCAGTCACCAGCAATGGTCGGAAGTCCTATTCGATCACCAAAAA
CTGTATCCAAAGAAAAGAAATCACCTGGACGTTCCAAGAGCCCCAAGAGTCCCAAGAGCCCCAAGGTCAC
GACTCACATTCCCCAAACACCTGTGAGACCTGAAACGCCCAACAGGACTCCTTCAGCTACACTCAGTGAA
AAAATCAGTAAAGAGACTATCCAGGTAAAACAAATACAGACACCCCCTGATGCTGGGAAACTGAACAGTG
AGAATCAGCCGAAAAAGGCTGTGGTAGCAGATAAAACGATTGAGGCCTCTATCGATGCTGTGATTGCACG
AGCCTGTGCTGAGCGAGAGCCAGATCCTTTCGAATTTTCTTCTGGATCGGAATCTGAAGGAGACATTTTT
ACTAGCCCTAAGAGAATTTCAGGCCCGGAGTGTACTACTCCCAAAGCTTCCACTTCCGCGAACAATTTCA
CAAAGTCAGGATCCACTCCTCTGCCTCTTTCCGGTGGAACCTCAAGTTCCGATAACTCATGGACAATGGA
TGCCTCCATTGATGAGGTTGTACGTAAAGCAAAACTGGGAACACCTTCAAATATGCCCCCCAACTTTCCT
TATATCTCTTCTCCGTCAGTGTCTCCTCCCACTCCCGAACCTCTCCACAAGGTGTATGAGGAGAAAACCA
AGCTGCCTTCCTCCGTGGAGGTAAAGAAGAAGTTGAAAAAGGAACTAAAGACTAAAATGAAAAAGAAAGA
AAAGCAGAGAGATAGGGAGAGGGAAAAAGACAAGAACAAGGACAAAAGTAAGGAGAAGGATAAAGTGAAA
GAGAAAGAGAAAGACAAGGAAACTGGCAGGGAAACAAAGTATCCCTGGAAGGAATTTCTTAAAGAGGAAG
AGGCAGATCCCTACAAGTTTAAAATCAAAGAATTTGAAGATGTTGATCCCAAAGTGAAATTGAAAGATGG
ACTTGTGAGGAAGGAGAAAGAGAAGCATAAAGATAAGAAGAAAGATAGAGAGAAAGGCAAGAAAGATAAA
GATAAGAGAGAGAAAGAAAAAGTGAAAGATAAAGGCAGAGAAGATAAGATGAAAGCCCCAGCACCCCCAC
TGGTGTTGCCCCCAAAAGAGTTGGCCCTGCCCTTGTTCAGCCCTGCCACAGCCTCCAGGGTCCCAGCCAT
GCTGCCATCTTTGTTGCCAGTGCTTCCGGAAAAACTGTTTGAGGAGAAAGAGAAGGTGAAGGAGAAAGAA
AAGAAAAAGGACAAAAAGGAGAAGAAGAAAAAGAAGGAAAAAGAGAAGGAGAAGAAGGAGAAGGAAAGAG
AGAAAGAGAAGAGAGAGCGAGAGAAGAGAGAAAAAGAGAAGGAGAAACACAAGCATGAAAAAATAAAAGT
GGAACCAGTCGCTCTGGCCCCGAGTCCAGTTATCCCCAGATTAACTCTCCGAGTCGGTGCTGGCCAAGAC
AAGATTGTCATCAGCAAGGTGGTCCCTGCCCCCGAGGCCAAGCCGGCGCCCTCGCAGAACAGGCCGAAGA
CCCCACCGCCGGCCCCCGCGCCCGCCCCCGGCCCCATGCTCGTCAGCCCTGCGCCCGTGCCGCTGCCGCT
GCTCGCCCAGGCCGCCGCGGGCCCTGCCCTGCTGCCCTCCCCGGGTCCCGCCGCCTCCGGGGCCAGTGCC
AAAGCCCCCGTGCGCAGCGTGGTGACTGAGACGGTCAGCACCTACGTGATCCGAGATGAGTGGGGCAATC
AGATCTGGATCTGCCCTGGGTGTAACAAGCCTGACGATGGGAGTCCCATGATTGGGTGTGACGACTGCGA
TGACTGGTACCACTGGCCCTGTGTTGGAATCATGACTGCACCCCCAGAAGAGATGCAGTGGTTCTGCCCC
AAGTGTGCGAACAAGAAGAAGGACAAAAAGCACAAGAAGAGGAAGCATCGAGCCCACTGA

Translation (929 aa):
MCESYSRSLLRVSVAQICQALGWDSVQLSACHLLTDVLQRYLQQLGRGCHRYSELYGRTDPILDDVGEAF
QLMGVSLHELEDYIHNIEPVTFPHQIPSFPVSKNNVLQFPQPGSKDAEERKEYIPDYLPPIVSSQEEEEE
EQVPTDGGTSAEAMQVPLEEDDELEEEEIINDENFLGKRPLDSPEAEELPAMKRPRLLSTKGDTLDVVLL
EAREPLSSINTQKIPPMLSPVHVQDSTDLAPPSPEPPMLAPVAKSQMPTAKPLETKSFTPKTKTKTSSPG
QKTKSPKTAQSPAMVGSPIRSPKTVSKEKKSPGRSKSPKSPKSPKVTTHIPQTPVRPETPNRTPSATLSE
KISKETIQVKQIQTPPDAGKLNSENQPKKAVVADKTIEASIDAVIARACAEREPDPFEFSSGSESEGDIF
TSPKRISGPECTTPKASTSANNFTKSGSTPLPLSGGTSSSDNSWTMDASIDEVVRKAKLGTPSNMPPNFP
YISSPSVSPPTPEPLHKVYEEKTKLPSSVEVKKKLKKELKTKMKKKEKQRDREREKDKNKDKSKEKDKVK
EKEKDKETGRETKYPWKEFLKEEEADPYKFKIKEFEDVDPKVKLKDGLVRKEKEKHKDKKKDREKGKKDK
DKREKEKVKDKGREDKMKAPAPPLVLPPKELALPLFSPATASRVPAMLPSLLPVLPEKLFEEKEKVKEKE
KKKDKKEKKKKKEKEKEKKEKEREKEKREREKREKEKEKHKHEKIKVEPVALAPSPVIPRLTLRVGAGQD
KIVISKVVPAPEAKPAPSQNRPKTPPPAPAPAPGPMLVSPAPVPLPLLAQAAAGPALLPSPGPAASGASA
KAPVRSVVTETVSTYVIRDEWGNQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMTAPPEEMQWFCP
KCANKKKDKKHKKRKHRAH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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