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Report for CCDS4622.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4622.1 Public Homo sapiens 6 H2AC12 24 110 108 CCDS HistoryNCBI Gene:85235Re-query CCDS DB by CCDS ID:4622.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4622.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000377459.3 ENSP00000366679.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000377459.3Link to Ensembl Protein Viewer:ENSP00000366679.2Re-query CCDS DB by Nucleotide ID:ENST00000377459Re-query CCDS DB by Protein ID:ENSP00000366679
Original member Current member NCBI NM_080596.3 NP_542163.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_080596.3Link to Protein Sequence:NP_542163.1Re-query CCDS DB by Nucleotide ID:NM_080596Re-query CCDS DB by Protein ID:NP_542163Link to BLAST:NP_542163.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_542163.1 128 Q96KK5 128 100% 0 0

Chromosomal Locations for CCDS 4622.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 27147129 27147515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (387 nt):
ATGTCTGGACGTGGCAAGCAAGGCGGTAAAGCTCGCGCCAAGGCCAAGACCCGCTCTTCTCGGGCTGGGC
TTCAGTTCCCCGTGGGCCGAGTGCACCGCCTGCTCCGCAAGGGTAATTATGCCGAGCGGGTTGGAGCCGG
CGCGCCAGTGTACCTGGCTGCGGTGCTGGAGTACCTGACCGCTGAGATCCTGGAGCTGGCTGGCAATGCG
GCCCGCGACAACAAGAAGACCCGTATCATCCCGCGTCACCTCCAACTGGCCATCCGCAACGACGAGGAGC
TCAACAAGCTGCTGGGCAAAGTCACCATCGCGCAGGGTGGTGTCTTGCCCAATATCCAGGCCGTGCTGCT
GCCTAAGAAGACTGAGAGCCACCATAAGGCCAAATAA

Translation (128 aa):
MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNA
ARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHKAK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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