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Report for CCDS34495.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34495.1 Public Homo sapiens 6 TBX18 24 110 108 CCDS HistoryNCBI Gene:9096Re-query CCDS DB by CCDS ID:34495.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34495.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000369663.10 ENSP00000358677.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000369663.10Link to Ensembl Protein Viewer:ENSP00000358677.4Re-query CCDS DB by Nucleotide ID:ENST00000369663Re-query CCDS DB by Protein ID:ENSP00000358677
Original member Current member NCBI NM_001080508.3 NP_001073977.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001080508.3Link to Protein Sequence:NP_001073977.1Re-query CCDS DB by Nucleotide ID:NM_001080508Re-query CCDS DB by Protein ID:NP_001073977Link to BLAST:NP_001073977.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073977.1 607 O95935 607 100% 0 0

Chromosomal Locations for CCDS 34495.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 84736685 84737409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 84738497 84738591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 84744261 84744325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 84747920 84748087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 84756698 84756869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 84760255 84760356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 84762544 84762748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 84763890 84764181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1824 nt):
ATGGCCGAGAAGCGAAGGGGCTCGCCGTGCAGCATGCTAAGCCTCAAGGCGCACGCTTTCTCGGTGGAGG
CGCTGATCGGCGCCGAGAAGCAGCAACAGCTTCAGAAGAAGCGGCGAAAACTGGGCGCCGAAGAGGCGGC
GGGGGCCGTGGACGACGGAGGCTGCAGCCGCGGCGGCGGCGCGGGCGAAAAGGGTTCTTCTGAGGGAGAC
GAAGGCGCTGCGCTCCCGCCGCCGGCTGGGGCGACGTCTGGGCCGGCTCGGAGTGGCGCAGACCTGGAGC
GCGGAGCCGCGGGCGGCTGTGAGGACGGCTTCCAGCAGGGAGCTTCCCCTCTGGCGTCACCGGGAGGCTC
CCCCAAGGGGTCTCCGGCGCGCTCCCTGGCCCGGCCCGGGACCCCTCTGCCCTCGCCGCAGGCCCCGCGG
GTGGATCTGCAGGGAGCCGAGCTCTGGAAGCGCTTTCATGAGATAGGCACTGAGATGATCATCACCAAGG
CCGGCAGGCGCATGTTTCCAGCAATGAGAGTGAAGATCTCTGGATTAGATCCTCACCAGCAATATTACAT
TGCCATGGATATTGTACCAGTGGACAACAAAAGATACAGGTATGTTTACCACAGTTCGAAATGGATGGTG
GCAGGTAATGCTGACTCGCCTGTGCCACCCCGTGTGTACATTCATCCAGACTCGCCTGCCTCGGGGGAGA
CTTGGATGAGACAAGTTATCAGCTTCGACAAGCTGAAGCTCACCAACAATGAACTGGATGACCAAGGCCA
TATTATTCTTCATTCTATGCACAAATACCAACCGCGAGTGCACGTCATCCGTAAAGACTGTGGAGACGAT
CTTTCTCCCATCAAGCCTGTTCCATCCGGGGAGGGAGTAAAGGCATTCTCCTTTCCAGAAACTGTCTTCA
CAACCGTCACTGCCTATCAGAATCAGCAGATTACTCGCCTGAAGATAGATAGGAATCCATTTGCTAAAGG
CTTCCGAGACTCCGGGCGCAACAGAATGGGTTTGGAAGCCTTGGTGGAATCATATGCATTCTGGCGACCA
TCACTACGGACTCTGACCTTTGAAGATATCCCTGGAATTCCCAAGCAAGGCAATGCAAGTTCCTCCACCT
TGCTCCAAGGTACTGGGAATGGCGTTCCTGCCACTCACCCTCACCTTTTGTCTGGCTCCTCTTGCTCCTC
TCCTGCCTTCCATCTGGGGCCCAACACCAGCCAGCTGTGTAGTCTGGCCCCTGCTGACTATTCTGCCTGT
GCCCGCTCAGGCCTCACCCTCAACCGATACAGCACATCTTTGGCAGAGACCTACAACAGGCTCACCAACC
AGGCTGGTGAGACCTTTGCCCCGCCCAGGACTCCCTCCTATGTGGGCGTGAGCAGCAGCACCTCCGTGAA
CATGTCCATGGGTGGCACTGATGGGGACACCTTCAGCTGCCCACAGACCAGCTTATCCATGCAGATTTCG
GGAATGTCCCCCCAGCTCCAGTATATCATGCCATCACCCTCCAGCAATGCCTTCGCCACTAACCAGACCC
ATCAGGGTTCCTATAATACTTTTAGATTACACAGCCCCTGTGCACTATATGGATATAACTTCTCCACATC
CCCCAAACTGGCTGCCAGTCCTGAGAAAATTGTTTCTTCCCAAGGAAGTTTCTTGGGGTCCTCACCGAGT
GGGACCATGACGGATCGGCAGATGTTGCCCCCTGTGGAAGGAGTGCACCTGCTTAGCAGTGGGGGTCAGC
AGAGTTTCTTTGACTCTAGGACCCTAGGAAGCTTAACTCTGTCATCATCTCAAGTATCTGCACATATGGT
CTGA

Translation (607 aa):
MAEKRRGSPCSMLSLKAHAFSVEALIGAEKQQQLQKKRRKLGAEEAAGAVDDGGCSRGGGAGEKGSSEGD
EGAALPPPAGATSGPARSGADLERGAAGGCEDGFQQGASPLASPGGSPKGSPARSLARPGTPLPSPQAPR
VDLQGAELWKRFHEIGTEMIITKAGRRMFPAMRVKISGLDPHQQYYIAMDIVPVDNKRYRYVYHSSKWMV
AGNADSPVPPRVYIHPDSPASGETWMRQVISFDKLKLTNNELDDQGHIILHSMHKYQPRVHVIRKDCGDD
LSPIKPVPSGEGVKAFSFPETVFTTVTAYQNQQITRLKIDRNPFAKGFRDSGRNRMGLEALVESYAFWRP
SLRTLTFEDIPGIPKQGNASSSTLLQGTGNGVPATHPHLLSGSSCSSPAFHLGPNTSQLCSLAPADYSAC
ARSGLTLNRYSTSLAETYNRLTNQAGETFAPPRTPSYVGVSSSTSVNMSMGGTDGDTFSCPQTSLSMQIS
GMSPQLQYIMPSPSSNAFATNQTHQGSYNTFRLHSPCALYGYNFSTSPKLAASPEKIVSSQGSFLGSSPS
GTMTDRQMLPPVEGVHLLSSGGQQSFFDSRTLGSLTLSSSQVSAHMV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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