NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS7911.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7911.1 Public Homo sapiens 11 TP53I11 24 110 108 CCDS HistoryNCBI Gene:9537Re-query CCDS DB by CCDS ID:7911.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7911.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000308212.9 ENSP00000309532.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000308212.9Link to Ensembl Protein Viewer:ENSP00000309532.5Re-query CCDS DB by Nucleotide ID:ENST00000308212Re-query CCDS DB by Protein ID:ENSP00000309532
Original member Current member EBI ENST00000395648.7 ENSP00000379009.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395648.7Link to Ensembl Protein Viewer:ENSP00000379009.3Re-query CCDS DB by Nucleotide ID:ENST00000395648Re-query CCDS DB by Protein ID:ENSP00000379009
Original member Current member EBI ENST00000525680.6 ENSP00000433474.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000525680.6Link to Ensembl Protein Viewer:ENSP00000433474.1Re-query CCDS DB by Nucleotide ID:ENST00000525680Re-query CCDS DB by Protein ID:ENSP00000433474
Original member Current member EBI ENST00000533940.5 ENSP00000436152.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000533940.5Link to Ensembl Protein Viewer:ENSP00000436152.1Re-query CCDS DB by Nucleotide ID:ENST00000533940Re-query CCDS DB by Protein ID:ENSP00000436152
Original member Current member EBI ENST00000616990.4 ENSP00000481456.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000616990.4Link to Ensembl Protein Viewer:ENSP00000481456.1Re-query CCDS DB by Nucleotide ID:ENST00000616990Re-query CCDS DB by Protein ID:ENSP00000481456
Original member Current member NCBI NM_001258320.2 NP_001245249.1 Accepted alive Link to Nucleotide Sequence:NM_001258320.2Link to Protein Sequence:NP_001245249.1Re-query CCDS DB by Nucleotide ID:NM_001258320Re-query CCDS DB by Protein ID:NP_001245249Link to BLAST:NP_001245249.1
Original member Current member NCBI NM_001258321.1 NP_001245250.1 Accepted alive Link to Nucleotide Sequence:NM_001258321.1Link to Protein Sequence:NP_001245250.1Re-query CCDS DB by Nucleotide ID:NM_001258321Re-query CCDS DB by Protein ID:NP_001245250Link to BLAST:NP_001245250.1
Original member Current member NCBI NM_001258322.1 NP_001245251.1 Accepted alive Link to Nucleotide Sequence:NM_001258322.1Link to Protein Sequence:NP_001245251.1Re-query CCDS DB by Nucleotide ID:NM_001258322Re-query CCDS DB by Protein ID:NP_001245251Link to BLAST:NP_001245251.1
Original member Current member NCBI NM_001258323.3 NP_001245252.1 Accepted alive Link to Nucleotide Sequence:NM_001258323.3Link to Protein Sequence:NP_001245252.1Re-query CCDS DB by Nucleotide ID:NM_001258323Re-query CCDS DB by Protein ID:NP_001245252Link to BLAST:NP_001245252.1
Original member Current member NCBI NM_001258324.1 NP_001245253.1 Accepted alive Link to Nucleotide Sequence:NM_001258324.1Link to Protein Sequence:NP_001245253.1Re-query CCDS DB by Nucleotide ID:NM_001258324Re-query CCDS DB by Protein ID:NP_001245253Link to BLAST:NP_001245253.1
Original member Current member NCBI NM_001318384.2 NP_001305313.1 Accepted alive Link to Nucleotide Sequence:NM_001318384.2Link to Protein Sequence:NP_001305313.1Re-query CCDS DB by Nucleotide ID:NM_001318384Re-query CCDS DB by Protein ID:NP_001305313Link to BLAST:NP_001305313.1
Original member Current member NCBI NM_001318385.1 NP_001305314.1 Accepted alive Link to Nucleotide Sequence:NM_001318385.1Link to Protein Sequence:NP_001305314.1Re-query CCDS DB by Nucleotide ID:NM_001318385Re-query CCDS DB by Protein ID:NP_001305314Link to BLAST:NP_001305314.1
Original member Current member NCBI NM_001318386.1 NP_001305315.1 Accepted alive Link to Nucleotide Sequence:NM_001318386.1Link to Protein Sequence:NP_001305315.1Re-query CCDS DB by Nucleotide ID:NM_001318386Re-query CCDS DB by Protein ID:NP_001305315Link to BLAST:NP_001305315.1
Original member Current member NCBI NM_006034.5 NP_006025.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006034.5Link to Protein Sequence:NP_006025.2Re-query CCDS DB by Nucleotide ID:NM_006034Re-query CCDS DB by Protein ID:NP_006025Link to BLAST:NP_006025.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001245249.1 189 O14683 189 100% 0 0
NP_001245250.1 189 O14683 189 100% 0 0
NP_001245251.1 189 O14683 189 100% 0 0
NP_001245252.1 189 O14683 189 100% 0 0
NP_001245253.1 189 O14683 189 100% 0 0
NP_001305313.1 189 O14683 189 100% 0 0
NP_001305314.1 189 O14683 189 100% 0 0
NP_001305315.1 189 O14683 189 100% 0 0
NP_006025.2 189 O14683 189 100% 0 0

Chromosomal Locations for CCDS 7911.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 44934884 44935017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 44935561 44935662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 44936803 44936899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 44937304 44937352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 44937555 44937613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 44938207 44938335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (570 nt):
ATGGCGGCCAAGCAGCCCCCGCCTCTGATGAAGAAGCACAGCCAGACGGACCTCGTGAGCCGCCTGAAGA
CCCGCAAGATCCTCGGCGTGGGCGGGGAGGATGACGACGGGGAGGTGCATCGCTCCAAGATCAGCCAGGT
CTTAGGCAATGAAATCAAGTTTACCATTCGGGAGCCTTTGGGGCTCAGGGTCTGGCAGTTCGTCTCTGCT
GTGCTCTTCTCCGGCATTGCCATCATGGCGCTTGCCTTCCCTGACCAGCTCTATGATGCGGTCTTTGATG
GAGCCCAGGTGACCAGCAAGACCCCCATCCGCCTCTACGGCGGTGCCCTCCTCAGCATCTCCCTGATCAT
GTGGAACGCTCTCTACACGGCTGAGAAGGTCATCATTCGATGGACCCTGCTCACCGAAGCTTGCTATTTC
GGGGTCCAGTTCTTGGTGGTCACTGCCACGCTAGCTGAGACGGGCCTCATGTCCCTGGGGATCCTGCTGC
TCCTGGTCAGCCGCCTCCTTTTTGTCGTCATCAGCATTTACTACTATTACCAAGTCGGCCGAAGACCCAA
GAAGGCCTAG

Translation (189 aa):
MAAKQPPPLMKKHSQTDLVSRLKTRKILGVGGEDDDGEVHRSKISQVLGNEIKFTIREPLGLRVWQFVSA
VLFSGIAIMALAFPDQLYDAVFDGAQVTSKTPIRLYGGALLSISLIMWNALYTAEKVIIRWTLLTEACYF
GVQFLVVTATLAETGLMSLGILLLLVSRLLFVVISIYYYYQVGRRPKKA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH