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Report for CCDS90852.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90852.1 Public Homo sapiens 1 CAMTA1 24 110 108 CCDS HistoryNCBI Gene:23261Re-query CCDS DB by CCDS ID:90852.1Re-query CCDS DB by GeneID:23261See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90852.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000700421.1 ENSP00000514995.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000700421.1Link to Ensembl Protein Viewer:ENSP00000514995.1Re-query CCDS DB by Nucleotide ID:ENST00000700421Re-query CCDS DB by Protein ID:ENSP00000514995
Original member Current member NCBI NM_001349617.1 NP_001336546.1 Accepted alive Link to Nucleotide Sequence:NM_001349617.1Link to Protein Sequence:NP_001336546.1Re-query CCDS DB by Nucleotide ID:NM_001349617Re-query CCDS DB by Protein ID:NP_001336546Link to BLAST:NP_001336546.1
Original member Current member NCBI NM_001349618.2 NP_001336547.1 Accepted alive Link to Nucleotide Sequence:NM_001349618.2Link to Protein Sequence:NP_001336547.1Re-query CCDS DB by Nucleotide ID:NM_001349618Re-query CCDS DB by Protein ID:NP_001336547Link to BLAST:NP_001336547.1

Chromosomal Locations for CCDS 90852.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 7732462 7732599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 7736344 7736540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 7736931 7737009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 7737255 7737570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 7737959 7738482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 7744835 7745022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 7745845 7746091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 7747710 7747781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 7751199 7751392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 7752459 7752533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 7755638 7755668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 7766459 7766491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2094 nt):
ATGTCCATCCTGGAACGACTGGAGCAGATGGAGAGGAGGATGGCCGAGATGACGGGGTCCCAGCAGCACA
AACAGGCGAGCGGAGGCGGCAGCAGTGGAGGCGGCAGCGGGAGCGGGAATGGAGGGAGCCAGGCACAGTG
TGCTTCTGGGACTGGGGCCTTGGGGAGCTGCTTTGAGAGCCGTGTGGTCGTGGTATGCGAGAAGATGATG
AGCCGAGCCTGCTGGGCGAAGTCCAAGCACTTGATCCACTCAAAGACTTTCCGCGGAATGACCCTACTCC
ACCTGGCCGCTGCCCAGGGCTATGCCACCCTAATCCAGACCCTCATCAAATGGCGTACAAAGCACGCGGA
TAGCATTGACCTGGAACTGGAAGTTGACCCCTTGAATGTGGACCACTTCTCCTGTACTCCTCTGATGTGG
GCGTGTGCCCTAGGGCACTTGGAAGCTGCCGTCGTGCTGTACAAGTGGGACCGTCGGGCCATCTCGATTC
CCGACTCTCTAGGAAGGCTGCCTTTGGGAATTGCCAGGTCACGGGGTCATGTGAAATTAGCAGAGTGTCT
GGAGCACCTGCAGAGAGATGAGCAGGCTCAGCTGGGACAGAACCCCAGAATCCACTGTCCTGCAAGCGAA
GAGCCCAGCACAGAGAGCTGGATGGCCCAGTGGCACAGCGAAGCCATCAGCTCTCCAGAAATACCCAAGG
GAGTCACTGTTATTGCAAGCACCAACCCAGAGCTGAGAAGACCTCGTTCTGAACCCTCTAATTACTACAG
CAGTGAGAGCCACAAAGATTATCCGGCTCCCAAAAAGCATAAATTGAACCCTGAGTACTTCCAGACAAGG
CAGGAGAAGCTGCTTCCCACTGCACTGAGTCTGGAAGAGCCAAATATCAGGAAGCAAAGCCCTAGTTCTA
AGCAGTCTGTCCCCGAGACACTCAGCCCCAGTGAAGGAGTGAGGGACTTCAGCCGGGAACTCTCCCCTCC
CACTCCAGAGACTGCAGCATTTCAAGCCTCTGGATCTCAGCCTGTAGGAAAGTGGAATTCCAAAGATCTT
TACATTGGTGTGTCTACAGTACAGGTGACTGGAAATCCGAAGGGGACCAGTGTAGGAAAGGAGGCAGCAC
CTTCACAGGTGCGTCCACGGGAACCAATGAGTGTCCTGATGATGGCTAACAGAGAGGTGGTGAATACAGA
GCTGGGGTCCTACCGTGATAGTGCAGAAAATGAAGAATGCGGCCAGCCCATGGATGACATACAGGTGAAC
ATGATGACCTTGGCAGAACACATTATTGAAGCCACACCTGACCGAATCAAGCAGGAGAATTTTGTGCCCA
TGGAGTCCTCAGGATTGGAAAGAACAGACCCTGCCACCATTAGCAGTACAATGAGCTGGCTGGCCAGTTA
TCTAGCGGATGCTGACTGCCTTCCCAGTGCTGCCCAGATCCGAAGTGCATATAACGAGCCTCTAACCCCT
TCTTCTAATACCAGCTTGAGCCCTGTTGGCTCTCCCGTCAGTGAAATCGCTTTCGAGAAACCTAACCTTC
CCTCCGCCGCGGATTGGTCAGAATTCCTGAGTGCATCTACCAGTGAGAAGGTAGAGAATGAGTTTGCTCA
GCTCACTCTGTCTGATCATGAACAGAGAGAACTCTATGAGGCTGCCAGGCTTGTCCAGACAGCTTTCCGG
AAATACAAGGGCCGACCCTTGCGGGAACAGCAAGAAGTAGCTGCTGCTGTTATTCAGCGTTGTTACAGAA
AATATAAACAGTACGCACTTTATAAAAAGATGACACAGGCTGCCATCCTTATCCAGAGCAAATTCCGAAG
TTACTATGAACAAAAAAAATTCCAGCAGAGCCGACGGGCTGCTGTGCTCATCCAAAAGTACTACCGAAGT
TATAAGAAATGTGGCAAAAGACGGCAGGCTCGCCGGACGGCTGTGATTGTACAACAGAAACTCAGGAGCA
GTTTGCTAACCAAAAAGCAGGATCAAGCTGCTCGAAAAATAATGAGGTTTCTTCGCCGCTGTCGCCACAG
CCCCCTGGTGGACCATAGGCTGTACAAAAGGAGTGAAAGAATTGAAAAAGGCCAAGGAACTTGA

Translation (697 aa):
MSILERLEQMERRMAEMTGSQQHKQASGGGSSGGGSGSGNGGSQAQCASGTGALGSCFESRVVVVCEKMM
SRACWAKSKHLIHSKTFRGMTLLHLAAAQGYATLIQTLIKWRTKHADSIDLELEVDPLNVDHFSCTPLMW
ACALGHLEAAVVLYKWDRRAISIPDSLGRLPLGIARSRGHVKLAECLEHLQRDEQAQLGQNPRIHCPASE
EPSTESWMAQWHSEAISSPEIPKGVTVIASTNPELRRPRSEPSNYYSSESHKDYPAPKKHKLNPEYFQTR
QEKLLPTALSLEEPNIRKQSPSSKQSVPETLSPSEGVRDFSRELSPPTPETAAFQASGSQPVGKWNSKDL
YIGVSTVQVTGNPKGTSVGKEAAPSQVRPREPMSVLMMANREVVNTELGSYRDSAENEECGQPMDDIQVN
MMTLAEHIIEATPDRIKQENFVPMESSGLERTDPATISSTMSWLASYLADADCLPSAAQIRSAYNEPLTP
SSNTSLSPVGSPVSEIAFEKPNLPSAADWSEFLSASTSEKVENEFAQLTLSDHEQRELYEAARLVQTAFR
KYKGRPLREQQEVAAAVIQRCYRKYKQYALYKKMTQAAILIQSKFRSYYEQKKFQQSRRAAVLIQKYYRS
YKKCGKRRQARRTAVIVQQKLRSSLLTKKQDQAARKIMRFLRRCRHSPLVDHRLYKRSERIEKGQGT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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