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Report for CCDS11129.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11129.1 Public Homo sapiens 17 ALOX12B 24 110 108 CCDS HistoryNCBI Gene:242Re-query CCDS DB by CCDS ID:11129.1Re-query CCDS DB by GeneID:242See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11129.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000647874.1 ENSP00000497784.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000647874.1Link to Ensembl Protein Viewer:ENSP00000497784.1Re-query CCDS DB by Nucleotide ID:ENST00000647874Re-query CCDS DB by Protein ID:ENSP00000497784
Original member Current member NCBI NM_001139.3 NP_001130.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001139.3Link to Protein Sequence:NP_001130.1Re-query CCDS DB by Nucleotide ID:NM_001139Re-query CCDS DB by Protein ID:NP_001130Link to BLAST:NP_001130.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001130.1 701 O75342 701 100% 0 0

Chromosomal Locations for CCDS 11129.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 8072771 8072950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8073148 8073318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8073657 8073757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8075595 8075716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8076175 8076344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8076657 8076743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8076990 8077193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8079396 8079539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8079769 8079941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8080235 8080338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8080658 8080780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8080884 8080976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8081106 8081187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8086016 8086220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8087296 8087442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2106 nt):
ATGGCCACCTACAAAGTCAGGGTGGCCACAGGCACCGACCTCTTGTCGGGAACACGGGACTCCATCTCAC
TG
ACCATTGTGGGGACACAAGGAGAGAGCCATAAGCAGCTGCTGAACCACTTTGGGAGAGACTTTGCAAC
T
GGGGCGGTGGGCCAGTACACCGTGCAGTGCCCTCAGGACCTGGGTGAGCTCATCATCATCCGCCTGCAC
AAA
GAGCGGTACGCCTTCTTCCCCAAGGACCCTTGGTACTGCAACTATGTGCAGATCTGTGCCCCCAACG
GC
CGTATCTACCACTTCCCCGCCTACCAGTGGATGGATGGCTACGAGACCCTGGCACTCCGGGAGGCCAC
A
GGAAAGACAACAGCAGATGACTCGCTCCCCGTCCTCCTGGAGCACAGAAAAGAGGAGATCAGAGCCAAG
CAG
GACTTCTACCACTGGCGAGTCTTTCTTCCTGGCCTGCCCAGCTATGTGCACATTCCCAGTTACCGCC
CT
CCGGTGCGGAGGCATCGCAACCCCAACCGGCCTGAGTGGAATGGCTATATTCCGGGATTCCCAATTCT
C
ATCAACTTTAAGGCCACCAAGTTCCTGAACTTAAATCTCCGCTACTCCTTCCTCAAGACGGCCTCCTTC
TTC
GTCCGCCTGGGGCCCATGGCACTGGCTTTCAAAGTCCGCGGCCTGTTGGACTGCAAACATTCGTGGA
AG
AGGCTGAAGGACATTAGGAAAATTTTCCCTGGCAAGAAATCTGTCGTCTCCGAGTACGTGGCCGAGCA
C
TGGGCAGAGGACACCTTCTTTGGGTACCAGTACCTCAACGGCGTCAACCCCGGCCTGATCCGCCGCTGC
ACG
CGGATCCCAGACAAGTTCCCCGTCACAGACGACATGGTGGCTCCGTTCCTGGGCGAGGGAACGTGCT
TG
CAAGCGGAGCTGGAGAAGGGGAACATTTACCTGGCCGACTACCGCATCATGGAGGGCATCCCCACCGT
G
GAGCTCAGCGGCCGGAAGCAGCACCACTGCGCCCCCCTCTGCCTGCTGCACTTTGGACCCGAGGGCAAG
ATG
ATGCCCATCGCCATCCAGCTCAGCCAGACCCCTGGGCCAGATTGCCCCATCTTCCTGCCCAGTGATT
CT
GAGTGGGACTGGCTGCTAGCCAAGACGTGGGTACGCTATGCGGAGTTCTACAGCCACGAGGCCATCGC
C
CACCTGCTGGAGACACACCTCATTGCTGAGGCCTTCTGCCTGGCCTTGCTGAGGAACCTGCCCATGTGC
CAC
CCCCTCTACAAGCTCCTCATCCCCCATACCCGATACACCGTCCAGATCAACAGCATTGGCCGGGCCG
TT
CTCCTCAATGAGGGGGGGCTCTCTGCCAAGGGCATGTCCCTGGGCGTGGAAGGCTTTGCTGGGGTGAT
G
GTACGGGCTCTGTCGGAGCTCACCTATGACAGCCTCTACCTCCCCAATGACTTTGTGGAGCGTGGGGTC
CAG
GACCTGCCTGGATATTACTACCGCGATGACAGCTTGGCGGTGTGGAATGCACTGGAGAAGTATGTGA
CG
GAGATCATCACCTATTATTACCCGAGTGACGCAGCCGTGGAGGGTGATCCGGAATTGCAGTCTTGGGT
G
CAGGAAATATTTAAAGAGTGCCTCCTGGGGCGGGAGAGCTCAGGCTTCCCTAGGTGCTTGCGAACCGTG
CCT
GAGCTGATCCGATATGTCACTATAGTCATCTACACCTGCTCTGCCAAGCACGCTGCTGTCAACACAG
GC
CAGATGGAGTTCACCGCCTGGATGCCCAACTTCCCAGCGTCCATGCGGAATCCACCGATTCAGACTAA
G
GGGCTGACCACTCTGGAGACCTTCATGGACACGTTGCCGGATGTGAAGACCACGTGCATCACGCTGCTG
GTG
CTCTGGACCCTCAGCCGAGAGCCTGACGACAGGCGGCCCCTGGGACACTTCCCGGACATTCACTTCG
TG
GAGGAGGCCCCGCGGAGGAGCATAGAGGCGTTCCGCCAGCGCCTGAACCAGATCTCACACGACATCCG
C
CAGCGCAACAAGTGCCTTCCCATCCCCTACTACTACCTGGACCCGGTGCTGATTGAGAACAGCATTTCT
ATT
TAG


Translation (701 aa):
MATYKVRVATGTDLLSGTRDSISLTIVGTQGESHKQLLNHFGRDFATGAVGQYTVQCPQDLGELIIIRLH
K
ERYAFFPKDPWYCNYVQICAPNGRIYHFPAYQWMDGYETLALREAT
GKTTADDSLPVLLEHRKEEIRAK
Q
DFY
HWRVFLPGLPSYVHIPSYRPPVRRHRNPNRPEWNGYIPGFPILINFKATKFLNLNLRYSFLKTASF
F
VRLGP
MALAFKVRGLLDCKHSWKRLKDIRKIFPGKKSVVSEYVAEHWAEDTFFGYQYLNGVNPGLIRRC
T
RIPDKFPVTDDMVAPFLGEGTCLQAELE
KGNIYLADYRIMEGIPTVELSGRKQHHCAPLCLLHFGPEGK
M
MPIAIQ
LSQTPGPDCPIFLPSDSEWDWLLAKTWVRYAEFYSHEAIAHLLETHLIAEAFCLALLRNLPMC
H
PLYK
LLIPHTRYTVQINSIGRAVLLNEGGLSAKGMSLGVEGFAGVMVRALSELTYDSLYLPNDFVERGV
Q
DLPGYYYRDDSLAVWNALE
KYVTEIITYYYPSDAAVEGDPELQSWVQEIFKECLLGRESSGFPRCLRTV
P
ELIRYVTIVIYTCSAKHAAVNTGQ
MEFTAWMPNFPASMRNPPIQTKGLTTLETFMDTLPDVKTTCITLL
V
LWTLSREPDDR
RPLGHFPDIHFVEEAPRRSIEAFRQRLNQISHDIRQRNKCLPIPYYYLDPVLIENSIS
I




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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