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Report for CCDS6950.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6950.1 Public Homo sapiens 9 BARHL1 24 110 108 CCDS HistoryNCBI Gene:56751Re-query CCDS DB by CCDS ID:6950.1Re-query CCDS DB by GeneID:56751See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6950.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000263610.7 ENSP00000263610.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000263610.7Link to Ensembl Protein Viewer:ENSP00000263610.2Re-query CCDS DB by Nucleotide ID:ENST00000263610Re-query CCDS DB by Protein ID:ENSP00000263610
Original member Current member EBI ENST00000542090.1 ENSP00000444704.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000542090.1Link to Ensembl Protein Viewer:ENSP00000444704.1Re-query CCDS DB by Nucleotide ID:ENST00000542090Re-query CCDS DB by Protein ID:ENSP00000444704
Original member Current member NCBI NM_020064.4 NP_064448.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020064.4Link to Protein Sequence:NP_064448.1Re-query CCDS DB by Nucleotide ID:NM_020064Re-query CCDS DB by Protein ID:NP_064448Link to BLAST:NP_064448.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064448.1 327 Q9BZE3 327 100% 0 0

Chromosomal Locations for CCDS 6950.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 132582798 132583263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 132587329 132587551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 132589228 132589522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (984 nt):
ATGGAAGGCTCCAATGGCTTTGGGATCGACTCCATTCTCTCCCACCGCGCGGGCAGCCCCGCCCTTCCCA
AGGGGGACCCCTTGCTCGGGGACTGCCGTTCGCCCCTGGAGCTGAGTCCACGCTCAGAGAGCAGCAGCGA
CTGCTCTTCGCCAGCCTCTCCAGGAAGGGACTGTTTGGAGACGGGGACCCCACGGCCTGGCGGGGCATCC
GGCCCAGGTTTGGACTCCCACCTGCAGCCCGGGCAGCTCTCAGCCCCGGCCCAGTCGCGCACCGTCACCT
CCTCCTTTCTGATCAGGGACATCCTTGCCGACTGCAAACCACTCGCGGCCTGTGCACCCTACTCTAGCAG
CGGGCAGCCGGCAGCCCCTGAGCCTGGGGGCCGCCTTGCGGCCAAGGCCGCGGAGGACTTTAGAGACAAG
CTGGACAAAAGTGGCAGCAACGCCTCATCGGACTCTGAGTATAAAGTGAAGGAGGAGGGCGACCGCGAGA
TCTCCAGCTCCAGGGACAGTCCCCCGGTGCGCCTGAAAAAGCCACGCAAGGCGCGCACGGCCTTCACCGA
CCATCAGCTGGCGCAGCTGGAGCGCAGCTTCGAGCGGCAGAAGTACCTGAGCGTGCAGGACCGCATGGAG
CTCGCCGCCTCGCTCAACCTCACCGACACGCAGGTCAAGACCTGGTACCAGAACCGCAGGACTAAATGGA
AGCGACAGACGGCCGTCGGGTTGGAGCTGCTGGCGGAGGCAGGCAATTACTCAGCGCTCCAGCGGATGTT
CCCGTCGCCTTATTTCTACCCGCAGAGTCTGGTTTCCAACCTGGACCCCGGCGCGGCGCTCTACCTGTAC
CGCGGCCCCAGCGCGCCGCCGCCTGCTCTCCAGAGACCTCTGGTGCCCCGCATCCTCATCCACGGACTCC
AGGGCGCCAGCGAGCCGCCCCCGCCGCTGCCCCCCCTGGCCGGCGTCCTCCCACGCGCCGCGCAGCCTCG
GTGA

Translation (327 aa):
MEGSNGFGIDSILSHRAGSPALPKGDPLLGDCRSPLELSPRSESSSDCSSPASPGRDCLETGTPRPGGAS
GPGLDSHLQPGQLSAPAQSRTVTSSFLIRDILADCKPLAACAPYSSSGQPAAPEPGGRLAAKAAEDFRDK
LDKSGSNASSDSEYKVKEEGDREISSSRDSPPVRLKKPRKARTAFTDHQLAQLERSFERQKYLSVQDRME
LAASLNLTDTQVKTWYQNRRTKWKRQTAVGLELLAEAGNYSALQRMFPSPYFYPQSLVSNLDPGAALYLY
RGPSAPPPALQRPLVPRILIHGLQGASEPPPPLPPLAGVLPRAAQPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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