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Report for CCDS4539.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4539.1 Public Homo sapiens 6 CAP2 24 110 108 CCDS HistoryNCBI Gene:10486Re-query CCDS DB by CCDS ID:4539.1Re-query CCDS DB by GeneID:10486See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4539.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000229922.7 ENSP00000229922.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000229922.7Link to Ensembl Protein Viewer:ENSP00000229922.2Re-query CCDS DB by Nucleotide ID:ENST00000229922Re-query CCDS DB by Protein ID:ENSP00000229922
Original member Current member NCBI NM_006366.3 NP_006357.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006366.3Link to Protein Sequence:NP_006357.1Re-query CCDS DB by Nucleotide ID:NM_006366Re-query CCDS DB by Protein ID:NP_006357Link to BLAST:NP_006357.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006357.1 477 P40123-1 477 100% 0 0

Chromosomal Locations for CCDS 4539.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 17421556 17421676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17426590 17426690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17462996 17463073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17507169 17507312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17507641 17507726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17513849 17513954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17539269 17539458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17540973 17541148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17542837 17542960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17543061 17543143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17551464 17551604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17556359 17556442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1434 nt):
ATGGCCAACATGCAGGGACTGGTGGAAAGACTGGAACGAGCTGTCAGCCGCCTGGAGTCGCTGTCTGCAG
AGTCCCACAGGCCCCCTGGGAACTGCGGGGAAGTCAATGGTGTCATTGCAGGTGTGGCACCCTCCGTGGA
AGCCTTTGACAAGCTGATGGACAGTATGGTGGCCGAGTTTTTAAAGAACAGTAGGATCCTTGCTGGGGAC
GTGGAGACCCATGCAGAAATGGTGCACAGTGCTTTCCAGGCCCAGCGGGCTTTCCTTCTGATGGCCTCTC
AGTACCAACAACCCCACGAGAATGACGTGGCCGCACTTCTGAAACCCATATCGGAAAAGATTCAGGAAAT
CCAAACTTTCAGAGAGAGAAACCGGGGGAGTAACATGTTTAATCATCTTTCGGCCGTCAGCGAAAGCATC
CCTGCCCTTGGATGGATAGCTGTGTCTCCCAAACCTGGTCCTTATGTCAAGGAGATGAATGACGCTGCCA
CCTTTTACACTAACAGGGTCTTAAAGGACTACAAACACAGTGATTTGCGTCATGTGGATTGGGTGAAGTC
ATATTTGAACATTTGGAGTGAACTTCAAGCATACATCAAGGAACACCACACCACGGGCCTCACATGGAGC
AAAACAGGTCCTGTAGCATCCACAGTATCAGCGTTTTCTGTCCTCTCCTCTGGGCCTGGCCTTCCTCCAC
CCCCTCCTCCTCTGCCTCCTCCAGGGCCACCTCCACTTTTCGAGAATGAAGGCAAAAAAGAGGAATCTTC
TCCTTCACGCTCAGCTTTATTTGCCCAACTTAACCAGGGAGAAGCAATTACAAAAGGGCTCCGCCATGTC
ACAGATGACCAGAAGACATACAAAAATCCCAGCCTGCGGGCTCAAGGAGGGCAAACTCAATCTCCCACCA
AAAGTCACACTCCAAGTCCCACATCTCCTAAATCTTATCCTTCTCAAAAACATGCCCCAGTGTTGGAGTT
GGAAGGAAAGAAATGGAGAGTGGAGTACCAAGAGGACAGGAATGACCTTGTGATTTCAGAGACTGAGCTG
AAACAAGTGGCTTACATTTTCAAATGCGAAAAATCAACTATTCAGATAAAAGGGAAAGTAAACTCCATTA
TAATTGACAACTGTAAAAAACTCGGCCTGGTGTTTGACAATGTGGTGGGCATTGTGGAAGTGATCAACTC
CCAGGACATTCAAATCCAGGTAATGGGGAGAGTGCCAACAATTTCCATTAATAAGACAGAAGGTTGCCAC
ATATACCTCAGTGAAGATGCATTAGACTGTGAGATCGTGAGCGCCAAGTCATCTGAAATGAACATACTTA
TCCCTCAGGATGGTGATTATAGAGAATTTCCCATTCCTGAACAGTTCAAGACAGCATGGGATGGATCCAA
GTTAATCACTGAACCTGCAGAAATTATGGCCTAA

Translation (477 aa):
MANMQGLVERLERAVSRLESLSAESHRPPGNCGEVNGVIAGVAPSVEAFDKLMDSMVAEFLKNSRILAGD
VETHAEMVHSAFQAQRAFLLMASQYQQPHENDVAALLKPISEKIQEIQTFRERNRGSNMFNHLSAVSESI
PALGWIAVSPKPGPYVKEMNDAATFYTNRVLKDYKHSDLRHVDWVKSYLNIWSELQAYIKEHHTTGLTWS
KTGPVASTVSAFSVLSSGPGLPPPPPPLPPPGPPPLFENEGKKEESSPSRSALFAQLNQGEAITKGLRHV
TDDQKTYKNPSLRAQGGQTQSPTKSHTPSPTSPKSYPSQKHAPVLELEGKKWRVEYQEDRNDLVISETEL
KQVAYIFKCEKSTIQIKGKVNSIIIDNCKKLGLVFDNVVGIVEVINSQDIQIQVMGRVPTISINKTEGCH
IYLSEDALDCEIVSAKSSEMNILIPQDGDYREFPIPEQFKTAWDGSKLITEPAEIMA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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