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Report for CCDS6003.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6003.1 Public Homo sapiens 8 PDGFRL 24 110 108 CCDS HistoryNCBI Gene:5157Re-query CCDS DB by CCDS ID:6003.1Re-query CCDS DB by GeneID:5157See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6003.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000251630.11 ENSP00000251630.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000251630.11Link to Ensembl Protein Viewer:ENSP00000251630.4Re-query CCDS DB by Nucleotide ID:ENST00000251630Re-query CCDS DB by Protein ID:ENSP00000251630
Original member Current member EBI ENST00000541323.1 ENSP00000444211.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000541323.1Link to Ensembl Protein Viewer:ENSP00000444211.1Re-query CCDS DB by Nucleotide ID:ENST00000541323Re-query CCDS DB by Protein ID:ENSP00000444211
Original member Current member NCBI NM_001372073.1 NP_001359002.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001372073.1Link to Protein Sequence:NP_001359002.1Re-query CCDS DB by Nucleotide ID:NM_001372073Re-query CCDS DB by Protein ID:NP_001359002Link to BLAST:NP_001359002.1
Original member Current member NCBI NM_006207.2 NP_006198.1 Accepted alive Link to Nucleotide Sequence:NM_006207.2Link to Protein Sequence:NP_006198.1Re-query CCDS DB by Nucleotide ID:NM_006207Re-query CCDS DB by Protein ID:NP_006198Link to BLAST:NP_006198.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001359002.1 375 Q15198 375 100% 0 0
NP_006198.1 375 Q15198 375 100% 0 0

Chromosomal Locations for CCDS 6003.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 17577253 17577307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 17589468 17589765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 17621051 17621202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 17628487 17628780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 17634074 17634213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 17642613 17642801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1128 nt):
ATGAAGGTCTGGCTGCTGCTTGGTCTTCTGCTGGTGCACGAAGCGCTGGAGGATGTTACTGGCCAACACC
TTCCCAAGAACAAGCGTCCAAAAGAACCAGGAGAGAATAGAATCAAACCTACCAACAAGAAGGTGAAGCC
CAAAATTCCTAAAATGAAGGACAGGGACTCAGCCAATTCAGCACCAAAGACGCAGTCTATCATGATGCAA
GTGCTGGATAAAGGTCGCTTCCAGAAACCCGCCGCTACCCTGAGTCTGCTGGCGGGGCAAACTGTAGAGC
TTCGATGTAAAGGGAGTAGAATTGGGTGGAGCTACCCTGCGTATCTGGACACCTTTAAGGATTCTCGCCT
CAGCGTCAAGCAGAATGAGCGCTACGGCCAGTTGACTCTGGTCAACTCCACCTCGGCAGACACAGGTGAA
TTCAGCTGCTGGGTGCAGCTCTGCAGCGGCTACATCTGCAGGAAGGACGAGGCCAAAACGGGCTCCACCT
ACATCTTTTTTACAGAGAAAGGAGAACTCTTTGTACCTTCTCCCAGCTACTTCGATGTTGTCTACTTGAA
CCCGGACAGACAGGCTGTGGTTCCTTGTCGGGTGACCGTGCTGTCGGCCAAAGTCACGCTCCACAGGGAA
TTCCCAGCCAAGGAGATCCCAGCCAATGGAACGGACATTGTTTATGACATGAAGCGGGGCTTTGTGTATC
TGCAACCTCATTCCGAGCACCAGGGTGTGGTTTACTGCAGGGCGGAGGCCGGGGGCAGATCTCAGATCTC
CGTCAAGTACCAGCTGCTCTATGTGGCGGTTCCCAGTGGCCCTCCCTCAACAACCATCTTGGCTTCTTCA
AACAAAGTGAAAAGTGGGGACGACATCAGTGTGCTCTGCACTGTCCTGGGGGAGCCCGATGTGGAGGTGG
AGTTCACCTGGATCTTCCCAGGGCAGAAGGATGAAAGGCCTGTGACGATCCAAGACACTTGGAGGTTGAT
CCACAGAGGACTGGGACACACCACGAGAATCTCCCAGAGTGTCATTACAGTGGAAGACTTTGAGACGATT
GATGCAGGATATTACATTTGCACTGCTCAGAATCTTCAAGGACAGACCACAGTAGCTACCACTGTTGAGT
TTTCCTGA

Translation (375 aa):
MKVWLLLGLLLVHEALEDVTGQHLPKNKRPKEPGENRIKPTNKKVKPKIPKMKDRDSANSAPKTQSIMMQ
VLDKGRFQKPAATLSLLAGQTVELRCKGSRIGWSYPAYLDTFKDSRLSVKQNERYGQLTLVNSTSADTGE
FSCWVQLCSGYICRKDEAKTGSTYIFFTEKGELFVPSPSYFDVVYLNPDRQAVVPCRVTVLSAKVTLHRE
FPAKEIPANGTDIVYDMKRGFVYLQPHSEHQGVVYCRAEAGGRSQISVKYQLLYVAVPSGPPSTTILASS
NKVKSGDDISVLCTVLGEPDVEVEFTWIFPGQKDERPVTIQDTWRLIHRGLGHTTRISQSVITVEDFETI
DAGYYICTAQNLQGQTTVATTVEFS


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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