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Report for CCDS54485.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54485.1 Public Homo sapiens 21 GET1 24 110 108 CCDS HistoryNCBI Gene:7485Re-query CCDS DB by CCDS ID:54485.1Re-query CCDS DB by GeneID:7485See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54485.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000380708.5 ENSP00000370084.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000380708.5Link to Ensembl Protein Viewer:ENSP00000370084.1Re-query CCDS DB by Nucleotide ID:ENST00000380708Re-query CCDS DB by Protein ID:ENSP00000370084
Original member Current member EBI ENST00000398753.5 ENSP00000381737.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000398753.5Link to Ensembl Protein Viewer:ENSP00000381737.1Re-query CCDS DB by Nucleotide ID:ENST00000398753Re-query CCDS DB by Protein ID:ENSP00000381737
Original member Current member EBI ENST00000650376.1 ENSP00000497103.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000650376.1Link to Ensembl Protein Viewer:ENSP00000497103.1Re-query CCDS DB by Nucleotide ID:ENST00000650376Re-query CCDS DB by Protein ID:ENSP00000497103
Original member Current member NCBI NM_001146218.3 NP_001139690.1 Accepted alive Link to Nucleotide Sequence:NM_001146218.3Link to Protein Sequence:NP_001139690.1Re-query CCDS DB by Nucleotide ID:NM_001146218Re-query CCDS DB by Protein ID:NP_001139690Link to BLAST:NP_001139690.1
Original member Current member NCBI NM_001350294.2 NP_001337223.1 Accepted alive Link to Nucleotide Sequence:NM_001350294.2Link to Protein Sequence:NP_001337223.1Re-query CCDS DB by Nucleotide ID:NM_001350294Re-query CCDS DB by Protein ID:NP_001337223Link to BLAST:NP_001337223.1
Original member Current member NCBI NM_001350295.2 NP_001337224.1 Accepted alive Link to Nucleotide Sequence:NM_001350295.2Link to Protein Sequence:NP_001337224.1Re-query CCDS DB by Nucleotide ID:NM_001350295Re-query CCDS DB by Protein ID:NP_001337224Link to BLAST:NP_001337224.1
Original member Current member NCBI NM_001350296.2 NP_001337225.1 Accepted alive Link to Nucleotide Sequence:NM_001350296.2Link to Protein Sequence:NP_001337225.1Re-query CCDS DB by Nucleotide ID:NM_001350296Re-query CCDS DB by Protein ID:NP_001337225Link to BLAST:NP_001337225.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139690.1 140 O00258-2 140 100% 0 0
NP_001337223.1 140 O00258-2 140 100% 0 0
NP_001337224.1 140 O00258-2 140 100% 0 0
NP_001337225.1 140 O00258-2 140 100% 0 0

Chromosomal Locations for CCDS 54485.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 39390698 39390863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 39391769 39391836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 39393166 39393280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 39396866 39396939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (423 nt):
ATGTCCAGGGTGCTGCAGAAGGACGCGGAGCAGGAGTCACAGATGAGAGCGGAGATCCAGGACATGAAGC
AGGAGCTCTCCACAGTCAACATGATGGACGAGTTTGCCAGATATGCCAGGCTGGAAAGAAAGATCAACAA
GATGACGGATAAGCTCAAAACCCATGTGAAAGCTCGGACAGCTCAATTAGCCAAGATAAAATGGGTGATA
AGTGTCGCTTTCTACGTATTGCAGGCTGCCCTGATGATCTCACTCATTTGGAAGTATTATTCTGTCCCTG
TGGCTGTCGTGCCGAGTAAATGGATAACCCCTCTAGACCGCCTGGTAGCCTTTCCTACTAGAGTAGCAGG
TGGTGTTGGAATTACCTGTTGGATTTTAGTCTGTAACAAAGTTGTCGCTATTGTGCTTCATCCGTTCAGC
TGA

Translation (140 aa):
MSRVLQKDAEQESQMRAEIQDMKQELSTVNMMDEFARYARLERKINKMTDKLKTHVKARTAQLAKIKWVI
SVAFYVLQAALMISLIWKYYSVPVAVVPSKWITPLDRLVAFPTRVAGGVGITCWILVCNKVVAIVLHPFS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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