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Report for CCDS81565.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81565.1 Public Homo sapiens 11 CELF1 24 110 108 CCDS HistoryNCBI Gene:10658Re-query CCDS DB by CCDS ID:81565.1Re-query CCDS DB by GeneID:10658See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81565.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000531165.5 ENSP00000436864.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000531165.5Link to Ensembl Protein Viewer:ENSP00000436864.1Re-query CCDS DB by Nucleotide ID:ENST00000531165Re-query CCDS DB by Protein ID:ENSP00000436864
Original member Current member EBI ENST00000687097.1 ENSP00000508525.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000687097.1Link to Ensembl Protein Viewer:ENSP00000508525.1Re-query CCDS DB by Nucleotide ID:ENST00000687097Re-query CCDS DB by Protein ID:ENSP00000508525
Original member Current member NCBI NM_001330272.2 NP_001317201.1 Accepted alive Link to Nucleotide Sequence:NM_001330272.2Link to Protein Sequence:NP_001317201.1Re-query CCDS DB by Nucleotide ID:NM_001330272Re-query CCDS DB by Protein ID:NP_001317201Link to BLAST:NP_001317201.1
Original member Current member NCBI NM_001376369.1 NP_001363298.1 Accepted alive Link to Nucleotide Sequence:NM_001376369.1Link to Protein Sequence:NP_001363298.1Re-query CCDS DB by Nucleotide ID:NM_001376369Re-query CCDS DB by Protein ID:NP_001363298Link to BLAST:NP_001363298.1
Original member Current member NCBI NM_001376370.1 NP_001363299.1 Accepted alive Link to Nucleotide Sequence:NM_001376370.1Link to Protein Sequence:NP_001363299.1Re-query CCDS DB by Nucleotide ID:NM_001376370Re-query CCDS DB by Protein ID:NP_001363299Link to BLAST:NP_001363299.1
Original member Current member NCBI NM_001376371.1 NP_001363300.1 Accepted alive Link to Nucleotide Sequence:NM_001376371.1Link to Protein Sequence:NP_001363300.1Re-query CCDS DB by Nucleotide ID:NM_001376371Re-query CCDS DB by Protein ID:NP_001363300Link to BLAST:NP_001363300.1
Original member Current member NCBI NM_001376372.1 NP_001363301.1 Accepted alive Link to Nucleotide Sequence:NM_001376372.1Link to Protein Sequence:NP_001363301.1Re-query CCDS DB by Nucleotide ID:NM_001376372Re-query CCDS DB by Protein ID:NP_001363301Link to BLAST:NP_001363301.1
Original member Current member NCBI NM_001376373.1 NP_001363302.1 Accepted alive Link to Nucleotide Sequence:NM_001376373.1Link to Protein Sequence:NP_001363302.1Re-query CCDS DB by Nucleotide ID:NM_001376373Re-query CCDS DB by Protein ID:NP_001363302Link to BLAST:NP_001363302.1
Original member Current member NCBI NM_001376374.1 NP_001363303.1 Accepted alive Link to Nucleotide Sequence:NM_001376374.1Link to Protein Sequence:NP_001363303.1Re-query CCDS DB by Nucleotide ID:NM_001376374Re-query CCDS DB by Protein ID:NP_001363303Link to BLAST:NP_001363303.1
Original member Current member NCBI NM_001376375.1 NP_001363304.1 Accepted alive Link to Nucleotide Sequence:NM_001376375.1Link to Protein Sequence:NP_001363304.1Re-query CCDS DB by Nucleotide ID:NM_001376375Re-query CCDS DB by Protein ID:NP_001363304Link to BLAST:NP_001363304.1
Original member Current member NCBI NM_001376376.1 NP_001363305.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001376376.1Link to Protein Sequence:NP_001363305.1Re-query CCDS DB by Nucleotide ID:NM_001376376Re-query CCDS DB by Protein ID:NP_001363305Link to BLAST:NP_001363305.1

Chromosomal Locations for CCDS 81565.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 47472230 47472357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47473088 47473231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47475336 47475521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47476846 47476959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47477297 47477425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47478877 47478952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47482695 47482856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47483453 47483532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47484389 47484523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47486750 47486798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47487159 47487241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47488837 47489024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47499453 47499523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1545 nt):
ATGGCTGCGTTTAAGTTGGATTTCCTTCCAGAAATGATGGTGGATCATTGCTCTTTGAATTCCAGTCCCG
TCTCAAAGAAAATGAACGGCACCCTGGACCACCCAGACCAACCAGATCTTGATGCTATCAAGATGTTTGT
GGGCCAGGTTCCAAGGACCTGGTCTGAAAAGGACTTGCGGGAACTCTTCGAACAGTATGGTGCTGTGTAT
GAAATCAACGTCCTAAGGGATAGGAGCCAAAACCCGCCTCAGAGCAAAGGGTGCTGTTTTGTTACATTTT
ACACCCGTAAAGCTGCATTAGAAGCTCAGAATGCTCTTCACAACATGAAAGTCCTCCCAGGGATGCATCA
CCCTATACAGATGAAACCTGCTGACAGTGAGAAGAACAATGCAGTGGAAGACAGGAAGCTGTTTATTGGT
ATGATTTCCAAGAAGTGCACTGAAAATGACATCCGAGTCATGTTCTCTTCGTTTGGACAGATTGAAGAAT
GCCGGATATTGCGGGGACCTGATGGCCTGAGCCGAGGTTGTGCATTTGTGACTTTTACAACAAGAGCCAT
GGCACAGACGGCTATCAAGGCAATGCACCAAGCACAGACCATGGAGGGTTGCTCATCACCCATGGTGGTA
AAATTTGCTGATACACAGAAGGACAAAGAACAGAAGAGAATGGCCCAGCAGCTCCAGCAGCAGATGCAGC
AAATCAGCGCAGCATCTGTGTGGGGAAACCTTGCTGGTCTAAATACTCTTGGACCCCAGTATTTAGCACT
TTATTTGCAGCTCCTTCAGCAGACTGCCTCCTCTGGGAACCTCAACACCCTGAGCAGCCTCCACCCAATG
GGAGGGTTGAATGCAATGCAGTTACAGAATTTGGCTGCACTAGCTGCTGCAGCTAGTGCAGCTCAGAACA
CACCAAGTGGTACCAATGCTCTCACTACATCCAGCAGTCCCCTCAGCGTGCTCACTAGTTCAGCAGGGTC
CTCACCTAGCTCTAGCAGCAGTAATTCTGTCAACCCCATAGCCTCACTTGGAGCCCTGCAGACATTAGCT
GGAGCAACGGCTGGCCTCAATGTTGGCTCTTTGGCAGGAATGGCTGCTTTAAATGGTGGCCTGGGCAGCA
GTGGCCTTTCCAATGGCACCGGGAGCACCATGGAGGCCCTCACTCAGGCCTACTCGGGTATCCAGCAATA
TGCTGCTGCTGCGCTCCCCACTCTGTACAACCAGAATCTTCTGACACAGCAGAGTATTGGTGCTGCTGGA
AGCCAGAAGGAAGGTCCAGAGGGAGCCAACCTGTTCATCTACCACCTGCCCCAGGAGTTTGGTGATCAGG
ACCTGCTGCAGATGTTTATGCCCTTTGGGAATGTCGTGTCTGCCAAGGTTTTCATAGACAAGCAGACAAA
CCTGAGCAAGTGTTTTGGTTTTGTAAGTTACGACAATCCTGTTTCGGCCCAAGCTGCCATCCAGTCCATG
AACGGCTTTCAGATTGGCATGAAGCGGCTTAAAGTGCAGCTCAAACGTTCGAAGAATGACAGCAAGCCCT
ACTGA

Translation (514 aa):
MAAFKLDFLPEMMVDHCSLNSSPVSKKMNGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVY
EINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIG
MISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV
KFADTQKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALYLQLLQQTASSGNLNTLSSLHPM
GGLNAMQLQNLAALAAAASAAQNTPSGTNALTTSSSPLSVLTSSAGSSPSSSSSNSVNPIASLGALQTLA
GATAGLNVGSLAGMAALNGGLGSSGLSNGTGSTMEALTQAYSGIQQYAAAALPTLYNQNLLTQQSIGAAG
SQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM
NGFQIGMKRLKVQLKRSKNDSKPY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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