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Report for CCDS14149.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14149.1 Public Homo sapiens X MSL3 24 110 108 CCDS HistoryNCBI Gene:10943Re-query CCDS DB by CCDS ID:14149.1Re-query CCDS DB by GeneID:10943See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14149.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000650628.1 ENSP00000496838.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000650628.1Link to Ensembl Protein Viewer:ENSP00000496838.1Re-query CCDS DB by Nucleotide ID:ENST00000650628Re-query CCDS DB by Protein ID:ENSP00000496838
Original member Current member EBI ENST00000649271.1 ENSP00000496967.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000649271.1Link to Ensembl Protein Viewer:ENSP00000496967.1Re-query CCDS DB by Nucleotide ID:ENST00000649271Re-query CCDS DB by Protein ID:ENSP00000496967
Original member Current member EBI ENST00000648013.1 ENSP00000497518.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000648013.1Link to Ensembl Protein Viewer:ENSP00000497518.1Re-query CCDS DB by Nucleotide ID:ENST00000648013Re-query CCDS DB by Protein ID:ENSP00000497518
Original member Current member EBI ENST00000649078.1 ENSP00000498017.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000649078.1Link to Ensembl Protein Viewer:ENSP00000498017.1Re-query CCDS DB by Nucleotide ID:ENST00000649078Re-query CCDS DB by Protein ID:ENSP00000498017
Original member Current member EBI ENST00000482871.6 ENSP00000498064.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000482871.6Link to Ensembl Protein Viewer:ENSP00000498064.1Re-query CCDS DB by Nucleotide ID:ENST00000482871Re-query CCDS DB by Protein ID:ENSP00000498064
Original member Current member EBI ENST00000649602.1 ENSP00000498168.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000649602.1Link to Ensembl Protein Viewer:ENSP00000498168.1Re-query CCDS DB by Nucleotide ID:ENST00000649602Re-query CCDS DB by Protein ID:ENSP00000498168
Original member Current member NCBI NM_006800.4 NP_006791.2 Accepted alive Link to Nucleotide Sequence:NM_006800.4Link to Protein Sequence:NP_006791.2Re-query CCDS DB by Nucleotide ID:NM_006800Re-query CCDS DB by Protein ID:NP_006791Link to BLAST:NP_006791.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006791.2 355 Q8N5Y2-4 355 100% 0 0

Chromosomal Locations for CCDS 14149.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 11762163 11762252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 11762837 11762997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 11763780 11763938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 11765467 11765729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 11768573 11768682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 11772156 11772255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 11772621 11772705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 11774980 11775079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1068 nt):
ATGGAAGAAAGAACAATAACTATAGAAATCCCTGAAGTTCTGAAGAAGCAGCTGGAGGATGATTGTTACT
ACATTAACAGGAGGAAACGGTTAGTGAAACTTCCATGCCAGACCAACATCATAACGATTTTGGAATCCTA
TGTGAAGCATTTTGCTATCAATGCAGCCTTTTCAGCCAATGAGAGGCCTCGTCACCATCACGTTATGCCA
CATGCCAACATGAACGTGCATTATATCCCAGCAGAAAAGAATGTTGACCTTTGTAAGGAGATGGTGGATG
GATTAAGAATAACCTTTGATTACACTCTCCCGTTGGTTTTACTCTATCCATATGAACAAGCTCAGTATAA
AAAGGTGACTTCGTCTAAATTTTTTCTTCCAATTAAGGAAAGTGCCACAAGCACTAACAGGAGCCAGGAG
GAACTCTCTCCCAGTCCGCCTTTGTTGAATCCATCCACGCCACAGTCCACAGAGAGTCAGCCGACCACCG
GTGAACCAGCCACCCCCAAAAGGCGCAAAGCTGAGCCAGAAGCATTGCAGTCTCTGAGGCGGTCCACGCG
CCACAGTGCCAACTGTGACAGGCTTTCTGAGAGCAGCGCTTCACCTCAGCCCAAGCGCCGGCAGCAGGAC
ACATCCGCCAGCATGCCCAAGCTCTTCCTGCACCTGGAAAAGAAGACACCTGTGCATAGCAGATCATCTT
CACCTATTCCTCTGACTCCTAGCAAGGAAGGGAGTGCTGTGTTTGCTGGCTTTGAAGGGAGAAGAACTAA
TGAAATAAACGAGGTCCTCTCCTGGAAGCTTGTGCCTGACAATTACCCCCCAGGTGACCAGCCGCCTCCA
CCCTCTTACATTTATGGGGCACAACATTTGCTGCGATTGTTTGTGAAACTTCCAGAAATCCTTGGAAAGA
TGTCCTTTTCTGAGAAGAATCTGAAGGCTTTATTGAAGCACTTTGATCTCTTTTTGAGGTTTTTAGCAGA
ATACCACGATGACTTCTTCCCAGAGTCGGCTTATGTCGCTGCCTGTGAGGCACATTACAGCACCAAGAAC
CCCCGGGCAATTTATTAA

Translation (355 aa):
MEERTITIEIPEVLKKQLEDDCYYINRRKRLVKLPCQTNIITILESYVKHFAINAAFSANERPRHHHVMP
HANMNVHYIPAEKNVDLCKEMVDGLRITFDYTLPLVLLYPYEQAQYKKVTSSKFFLPIKESATSTNRSQE
ELSPSPPLLNPSTPQSTESQPTTGEPATPKRRKAEPEALQSLRRSTRHSANCDRLSESSASPQPKRRQQD
TSASMPKLFLHLEKKTPVHSRSSSPIPLTPSKEGSAVFAGFEGRRTNEINEVLSWKLVPDNYPPGDQPPP
PSYIYGAQHLLRLFVKLPEILGKMSFSEKNLKALLKHFDLFLRFLAEYHDDFFPESAYVAACEAHYSTKN
PRAIY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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