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Report for CCDS13157.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13157.1 Public Homo sapiens 20 CST9L 24 110 108 CCDS HistoryNCBI Gene:128821Re-query CCDS DB by CCDS ID:13157.1Re-query CCDS DB by GeneID:128821See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13157.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000376979.4 ENSP00000366178.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000376979.4Link to Ensembl Protein Viewer:ENSP00000366178.3Re-query CCDS DB by Nucleotide ID:ENST00000376979Re-query CCDS DB by Protein ID:ENSP00000366178
Original member Current member NCBI NM_080610.3 NP_542177.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_080610.3Link to Protein Sequence:NP_542177.1Re-query CCDS DB by Nucleotide ID:NM_080610Re-query CCDS DB by Protein ID:NP_542177Link to BLAST:NP_542177.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_542177.1 147 Q9H4G1 147 100% 0 0

Chromosomal Locations for CCDS 13157.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 23564948 23565037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 23565974 23566087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 23568211 23568450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (444 nt):
ATGCTGGGCCTGCCGTGGAAGGGAGGTCTGTCCTGGGCGCTGCTGCTGCTTCTCTTAGGCTCCCAGATCC
TGCTGATCTATGCCTGGCATTTCCACGAGCAAAGGGACTGTGATGAACACAATGTCATGGCTCGTTACCT
CCCTGCCACAGTGGAGTTTGCTGTCCACACATTCAACCAACAGAGCAAGGACTACTATGCCTACAGACTG
GGGCACATCTTGAATTCCTGGAAGGAGCAGGTGGAGTCCAAGACTGTATTCTCAATGGAGCTACTGCTGG
GGAGAACTAGGTGTGGGAAATTTGAAGACGACATTGACAACTGCCATTTCCAAGAAAGCACAGAGCTGAA
CAATACTTTCACCTGCTTCTTCACCATCAGCACCAGGCCCTGGATGACTCAGTTCAGCCTCCTGAACAAG
ACCTGCTTGGAGGGATTCCACTGA

Translation (147 aa):
MLGLPWKGGLSWALLLLLLGSQILLIYAWHFHEQRDCDEHNVMARYLPATVEFAVHTFNQQSKDYYAYRL
GHILNSWKEQVESKTVFSMELLLGRTRCGKFEDDIDNCHFQESTELNNTFTCFFTISTRPWMTQFSLLNK
TCLEGFH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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