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Report for CCDS45830.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45830.1 Public Homo sapiens 18 SPIRE1 24 110 108 CCDS HistoryNCBI Gene:56907Re-query CCDS DB by CCDS ID:45830.1Re-query CCDS DB by GeneID:56907See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45830.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000453447.6 ENSP00000407050.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000453447.6Link to Ensembl Protein Viewer:ENSP00000407050.1Re-query CCDS DB by Nucleotide ID:ENST00000453447Re-query CCDS DB by Protein ID:ENSP00000407050
Original member Current member NCBI NM_001128627.1 NP_001122099.1 Accepted alive Link to Nucleotide Sequence:NM_001128627.1Link to Protein Sequence:NP_001122099.1Re-query CCDS DB by Nucleotide ID:NM_001128627Re-query CCDS DB by Protein ID:NP_001122099Link to BLAST:NP_001122099.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001122099.1 622 Q08AE8-5 622 100% 0 0

Chromosomal Locations for CCDS 45830.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 12449638 12449896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12452255 12452391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12452485 12452512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12453068 12453138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12454346 12454483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12463351 12463493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12464868 12464958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12479699 12479871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12493072 12493201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12496016 12496102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12506477 12506641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12512454 12512531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12535476 12535601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12546674 12546904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12635062 12635073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1869 nt):
ATGGAAACAGAGGTCATTGAATCTTTGGGAATTATTATTTATAAAGCACTGGACTATGGTTTGAAGGAGA
ATGAAGAAAGGGAATTAAGCCCTCCCCTAGAGCAGCTTATCGATCACATGGCCAACACGGTGGAAGCTGA
CGGTAGCAATGATGAGGGCTATGAGGCTGCAGAAGAAGGCCTGGGAGATGAAGATGAAAAGAGAAAAATC
TCAGCTATTCGGTCATATAGAGATGTCATGAAGTTGTGTGCTGCTCATCTCCCTACTGAATCAGATGCAC
CAAATCATTATCAGGCAGTATGTCGTGCACTGTTTGCAGAAACAATGGAGCTCCATACATTTCTGACCAA
AATTAAGAGTGCGAAAGAGAATCTTAAGAAGATTCAAGAAATGGAAAAGAGCGATGAATCTAGCACAGAC
TTGGAAGAGCTGAAAAACGCTGACTGGGCACGATTCTGGGTACAGGTGATGAGGGATTTGAGGAATGGGG
TAAAACTTAAGAAGGTCCAAGAGCGGCAGTACAACCCTTTGCCCATTGAATATCAGCTCACCCCTTATGA
GATGTTAATGGATGACATTCGCTGCAAAAGATACACCTTGCGAAAAGTGATGGTGAATGGTGATATTCCC
CCTCGGTTAAAAAAGAGTGCTCATGAAATCATCCTCGACTTCATCAGATCCAGACCTCCTTTAAATCCAG
TCTCAGCCAGAAAACTGAAACCAACTCCACCACGGCCACGGAGCCTCCATGAAAGAATATTAGAAGAAAT
TAAAGCAGAAAGAAAGCTGCGGCCTGTATCACCAGAGGAGATTAGACGTAGCAGATTAGATGTGACTACC
CCTGAATCTACAAAGAATCTTGTGGAGTCATCTATGGTGAATGGAGGTTTGACATCACAAACAAAAGAAA
ACGGGTTAAGTACCTCACAGCAGGTGCCTGCACAGCGGAAGAAGCTCCTCAGAGCCCCAACTCTGGCCGA
ACTGGACAGCTCTGAGTCTGAGGAAGAAACGCTGCACAAGTCGACCAGCAGCAGCAGCGTGTCTCCCTCT
TTCCCTGAAGAGCCAGTCCTGGAGGCCGTGTCCACAAGGAAGAAGCCTCCAAAATTCCTGCCCATATCAT
CAACACCCCAGCCAGAGAGACGGCAGCCACCCCAGAGACGACATTCCATTGAAAAGGAAACGCCTACTAA
CGTGAGGCAGTTCCTGCCGCCTTCCAGGCAGAGTTCCCGCTCTCTTGAGGAATTCTGCTACCCAGTGGAA
TGCCTCGCTCTTACTGTGGAAGAAGTGATGCATATTCGCCAGGTCCTGGTGAAGGCAGAGCTGGAAAAAT
ACCAACAGTATAAAGACATCTACACCGCCTTGAAAAAAGGAAAGCTCTGCTTTTGTTGCCGAACCAGGAG
GTTTTCCTTCTTCACTTGGTCTTATACCTGTCAGTTCTGTAAGAGGCCGGTGTGCTCACAGTGTTGCAAA
AAGATGCGGCTGCCCTCCAAACCATACTCCACTCTTCCTATCTTTTCATTGGGACCTTCTGCTCTGCAAA
GAGGGGAAAGTAGTATGAGGTCAGAAAAACCCTCCACTGCCCATCATCGGCCACTTCGGAGCATTGCCAG
GTTCTCCTCAAAATCTAAGTCTATGGACAAATCAGATGAAGAACTCCAGTTTCCCAAAGAGTTGATGGAG
GACTGGAGCACCATGGAGGTGTGTGTGGACTGCAAGAAGTTCATTTCGGAAATCATCAGTTCAAGCCGGC
GCAGTCTGGTGTTGGCCAACAAAAGGGCCCGATTGAAAAGGAAAACGCAGTCTTTCTACATGTCCTCGCC
AGGCCCCTCGGAGTACTGCCCTTCAGAGAGGACGATCAGTGAGATCTGA

Translation (622 aa):
METEVIESLGIIIYKALDYGLKENEERELSPPLEQLIDHMANTVEADGSNDEGYEAAEEGLGDEDEKRKI
SAIRSYRDVMKLCAAHLPTESDAPNHYQAVCRALFAETMELHTFLTKIKSAKENLKKIQEMEKSDESSTD
LEELKNADWARFWVQVMRDLRNGVKLKKVQERQYNPLPIEYQLTPYEMLMDDIRCKRYTLRKVMVNGDIP
PRLKKSAHEIILDFIRSRPPLNPVSARKLKPTPPRPRSLHERILEEIKAERKLRPVSPEEIRRSRLDVTT
PESTKNLVESSMVNGGLTSQTKENGLSTSQQVPAQRKKLLRAPTLAELDSSESEEETLHKSTSSSSVSPS
FPEEPVLEAVSTRKKPPKFLPISSTPQPERRQPPQRRHSIEKETPTNVRQFLPPSRQSSRSLEEFCYPVE
CLALTVEEVMHIRQVLVKAELEKYQQYKDIYTALKKGKLCFCCRTRRFSFFTWSYTCQFCKRPVCSQCCK
KMRLPSKPYSTLPIFSLGPSALQRGESSMRSEKPSTAHHRPLRSIARFSSKSKSMDKSDEELQFPKELME
DWSTMEVCVDCKKFISEIISSSRRSLVLANKRARLKRKTQSFYMSSPGPSEYCPSERTISEI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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