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Report for CCDS4684.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4684.2 Public Homo sapiens 6 C6orf136 24 110 108 CCDS HistoryNCBI Gene:221545Re-query CCDS DB by CCDS ID:4684.2Re-query CCDS DB by GeneID:221545See the combined annotation on chromosome 6 in Sequence Viewer

Public Note for CCDS 4684.1
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript data. The previous representation appeared to be partial on the 5' end.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 4684.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000376471.8 ENSP00000365654.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000376471.8Link to Ensembl Protein Viewer:ENSP00000365654.4Re-query CCDS DB by Nucleotide ID:ENST00000376471Re-query CCDS DB by Protein ID:ENSP00000365654
Original member Current member NCBI NM_145029.4 NP_659466.2 Accepted alive Link to Nucleotide Sequence:NM_145029.4Link to Protein Sequence:NP_659466.2Re-query CCDS DB by Nucleotide ID:NM_145029Re-query CCDS DB by Protein ID:NP_659466Link to BLAST:NP_659466.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659466.2 181 Q5SQH8-3 181 100% 0 0

Chromosomal Locations for CCDS 4684.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 30647232 30647303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30650994 30651082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30651266 30651466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30652648 30652717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30652802 30652915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (546 nt):
ATGTACCAGCCCAGCCGGGGTGCGGCCCGGCGTCTCGGCCCTTGCCTGCGCGCCTACCAGGCTCGACCCC
AGCTTCCCAAGCTCTTCCTTCAGTCCCACGACTACAGTCTGTATTCCTTGGATGTGGAATTCATCAATGA
GATCCTCAACATACGTACCAAGGGCCGGACATGGTACATTCTTTCACTGACCCTCTGCCGTTTCCTGGCC
TGGAATTATTTTGCACACCTTCGTTTGGAGGTTTTACAGCTGACCCGCCACCCTGAGAACTGGACCCTGC
AAGCCCGGTGGCGGCTTGTGGGGCTGCCCGTCCACTTGCTCTTTTTGCGGTTCTACAAGCGTGACAAAGA
CGAGCATTACCGGACCTATGATGCCTACTCCACTTTCTACCTGAATTCCAGTGGCCTCATTTGTCGCCAT
CGTCTAGATAAACTGATGCCTTCACACTCACCTCCAACGCCTGTGAAGAAGCTGCTAGTGGGAGCCCTGG
TGGCCCTGGGGCTGTCAGAGCCAGAACCTGACTTAAACCTGTGTTCCAAGCCCTGA

Translation (181 aa):
MYQPSRGAARRLGPCLRAYQARPQLPKLFLQSHDYSLYSLDVEFINEILNIRTKGRTWYILSLTLCRFLA
WNYFAHLRLEVLQLTRHPENWTLQARWRLVGLPVHLLFLRFYKRDKDEHYRTYDAYSTFYLNSSGLICRH
RLDKLMPSHSPPTPVKKLLVGALVALGLSEPEPDLNLCSKP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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