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Report for CCDS94192.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
94192.1 Public Homo sapiens 7 GARIN1B 24 110 108 CCDS HistoryNCBI Gene:84691Re-query CCDS DB by CCDS ID:94192.1Re-query CCDS DB by GeneID:84691See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 94192.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000621392.5 ENSP00000477573.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000621392.5Link to Ensembl Protein Viewer:ENSP00000477573.2Re-query CCDS DB by Nucleotide ID:ENST00000621392Re-query CCDS DB by Protein ID:ENSP00000477573
Original member Current member NCBI NM_001282788.3 NP_001269717.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001282788.3Link to Protein Sequence:NP_001269717.1Re-query CCDS DB by Nucleotide ID:NM_001282788Re-query CCDS DB by Protein ID:NP_001269717Link to BLAST:NP_001269717.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269717.1 342 Q96KD3-2 342 100% 0 0

Chromosomal Locations for CCDS 94192.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 128715442 128715690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128716813 128716997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128718831 128719083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128723197 128723318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128726834 128726871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128729902 128730069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128731100 128731113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1029 nt):
ATGTTGTCATCATTTCCACATAGAAAGACTTGGAGGAAATCAAAGAAGACAGTAAAAGTCACAAGATCCT
ATCCAACCTTCCCTTCCCTGAATGCCTGGGAAGAATTCAGGGGCCTCTTGCCTGTGGATGGAGAGCCGAA
CCCTGGAGCGGGCCTAGGTGTGGAGGAGGGACTGCTCTGCCGGGTGGTTCATTCTCCAGAATTCAACCTG
TTTCTTGACTCCGTGGTGTTTGAAAGCAACTTCATCCAGGTCAAAAGGGGCAGGAATTGGAGAGACGTCT
ACAAAGCTTCCAACACCATGGCCCTGGGGGTGACCTCCTCGGTACCCTGCCTGCCCCTCCCCAACATCCT
ACTCATGGCCAGTGTCAAATGGCACCAGGGGCAGAACCAGACATGGAACAGACCATCCATAGCCCCCAAC
ATCTTCCTGAAGAGGATTCTCCCATTGAGGTTTGTGGAGCTCCAGGTATGTGACCACTATCAACGCATCC
TGCAGTTGAGGACAGTCACTGAGAAGATTTATTACCTAAAGCTCCATCCTGACCATCCTGAGACTGTCTT
CCACTTCTGGATCCGACTGGTTCAAATTCTGCAAAAGGGGCTGTCCATCACCACCAAAGACCCTAGGATT
CTTGTCACGCACTGCCTGGTACCCAAGAACTGCAGCAGCCCCTCAGGAGATTCGAAGTTAGTACAGAAGA
AACTCCAAGCCTCCCAGCCCAGCGAGAGTCTCATTCAGCTAATGACCAAGGGGGAGAGTGAAGCCCTGTC
TCAGATTTTTGCCGACTTACACCAGCAGAACCAGTTGAGGAGCAGCAGAAAGGTGGAGACCAACAAGAAC
AGCTCAGGGAAAGATTCTTCCCGTGAAGACAGCATCCCTTGCACCTGTGACCTACGTTGGAGGGCTTCAT
TCACGTACGGAGAGTGGGAAAGAGAGAACCCCTCCGGCCTGCAGCCCCTCTCACTACTCAGCACTCTGGC
AGCCTCCACCGGGCCACAGCTGGCCCCACCCATAGGAAATTCTATTTGA

Translation (342 aa):
MLSSFPHRKTWRKSKKTVKVTRSYPTFPSLNAWEEFRGLLPVDGEPNPGAGLGVEEGLLCRVVHSPEFNL
FLDSVVFESNFIQVKRGRNWRDVYKASNTMALGVTSSVPCLPLPNILLMASVKWHQGQNQTWNRPSIAPN
IFLKRILPLRFVELQVCDHYQRILQLRTVTEKIYYLKLHPDHPETVFHFWIRLVQILQKGLSITTKDPRI
LVTHCLVPKNCSSPSGDSKLVQKKLQASQPSESLIQLMTKGESEALSQIFADLHQQNQLRSSRKVETNKN
SSGKDSSREDSIPCTCDLRWRASFTYGEWERENPSGLQPLSLLSTLAASTGPQLAPPIGNSI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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