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Report for CCDS7277.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7277.2 Public Homo sapiens 10 PBLD 24 110 108 CCDS HistoryNCBI Gene:64081Re-query CCDS DB by CCDS ID:7277.2Re-query CCDS DB by GeneID:64081See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 7277.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000309049.8 ENSP00000308466.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000309049.8Link to Ensembl Protein Viewer:ENSP00000308466.4Re-query CCDS DB by Nucleotide ID:ENST00000309049Re-query CCDS DB by Protein ID:ENSP00000308466
Original member Current member EBI ENST00000358769.7 ENSP00000351619.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000358769.7Link to Ensembl Protein Viewer:ENSP00000351619.2Re-query CCDS DB by Nucleotide ID:ENST00000358769Re-query CCDS DB by Protein ID:ENSP00000351619
Original member Current member NCBI NM_022129.4 NP_071412.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022129.4Link to Protein Sequence:NP_071412.2Re-query CCDS DB by Nucleotide ID:NM_022129Re-query CCDS DB by Protein ID:NP_071412Link to BLAST:NP_071412.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071412.2 288 P30039-1 288 100% 0 0

Chromosomal Locations for CCDS 7277.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 68284177 68284289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68285348 68285410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68288483 68288661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68288931 68289019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68292010 68292039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68292129 68292238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68296266 68296364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68296886 68296985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68306761 68306844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (867 nt):
ATGAAGCTTCCTATTTTCATAGCAGATGCATTCACAGCAAGAGCATTTCGTGGGAATCCTGCTGCTGTTT
GCCTCCTAGAAAATGAATTGGATGAAGACATGCATCAGAAAATTGCAAGGGAGATGAACCTCTCTGAAAC
TGCTTTTATCCGAAAACTGCACCCGACAGACAACTTTGCACAAAGTTCCTGCTTTGGACTGAGATGGTTT
ACACCAGCGAGTGAGGTCCCACTCTGTGGCCATGCCACCCTGGCTTCTGCAGCTGTGCTGTTTCACAAAA
TAAAAAACATGAATAGCACGCTCACGTTTGTCACTCTGAGTGGAGAACTAAGGGCCAGACGAGCAGAGGA
TGGCATCGTCCTGGACTTGCCTCTTTATCCAGCCCACCCCCAGGACTTCCATGAAGTAGAGGACTTGATA
AAGACTGCCATAGGCAACACACTGGTCCAGGACATCTGTTATTCTCCAGATACCCAAAAGCTCCTCGTCC
GCCTCAGTGACGTTTACAACAGGTCGTTTCTGGAGAACCTGAAAGTGAACACGGAGAATCTGCTGCAAGT
TGAAAACACAGGGAAGGTGAAAGGGCTTATTCTTACCCTTAAAGGAGAGCCTGGTGGGCAGACCCAAGCA
TTTGACTTTTACTCAAGATATTTTGCACCGTGGGTTGGTGTGGCTGAAGACCCAGTGACAGGGTCTGCAC
ACGCTGTTCTCAGCAGCTACTGGTCCCAGCATCTGGGGAAGAAAGAAATGCATGCTTTTCAGTGTTCCCA
CCGAGGAGGAGAGCTGGGAATTTCCCTTCGTCCAGACGGAAGGGTTGACATTAGAGGAGGTGCAGCTGTT
GTTTTAGAGGGCACACTGACAGCCTAG

Translation (288 aa):
MKLPIFIADAFTARAFRGNPAAVCLLENELDEDMHQKIAREMNLSETAFIRKLHPTDNFAQSSCFGLRWF
TPASEVPLCGHATLASAAVLFHKIKNMNSTLTFVTLSGELRARRAEDGIVLDLPLYPAHPQDFHEVEDLI
KTAIGNTLVQDICYSPDTQKLLVRLSDVYNRSFLENLKVNTENLLQVENTGKVKGLILTLKGEPGGQTQA
FDFYSRYFAPWVGVAEDPVTGSAHAVLSSYWSQHLGKKEMHAFQCSHRGGELGISLRPDGRVDIRGGAAV
VLEGTLTA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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