Algorithm-type

Defined in file cdd.asn
C++ class: CAlgorithm_type


Algorithm-type ::= SEQUENCE {
  scoring-Scheme    INTEGER { unassigned           (0),
                              percent-id           (1),
                              kimura-corrected     (2),
                              aligned-score        (3),
                              aligned-score-ext    (4),
                              aligned-score-filled (5),
                              blast-footprint      (6),
                              blast-full           (7),
			      hybrid-aligned-score (8),
                              other           (255) },
  clustering-Method INTEGER { unassigned             (0),
                              single-linkage         (1),
                              neighbor-joining       (2),
                              fast-minimum-evolution (3),
                              other                (255) },
  score-Matrix      INTEGER { unassigned (0),
                              blosum45   (1),
                              blosum62   (2),
                              blosum80   (3),
                              pam30      (4),
                              pam70      (5),
                              pam250     (6),
                              other    (255) } OPTIONAL,
  gapOpen           INTEGER OPTIONAL,
  gapExtend         INTEGER OPTIONAL,
  gapScaleFactor    INTEGER OPTIONAL,
  nTerminalExt      INTEGER OPTIONAL,
  cTerminalExt      INTEGER OPTIONAL,
  tree-scope        INTEGER { allDescendants       (0),
		                  immediateChildrenOnly(1),
		                  selfOnly             (2),
		                  other              (255) } OPTIONAL,
  coloring-scope    INTEGER { allDescendants        (0),
		                  immediateChildrenOnly (1),
		                  other               (255) } OPTIONAL
}