Cdd-descr
Defined in file cdd.asn
C++ class: CCdd_descr
Cdd-descr ::= CHOICE {
othername VisibleString, -- alternative names for the CDD
-- if domain has several common names
category VisibleString, -- intracellular, extracellular, etc.
-- to record spatial and/or temporal
-- expression in free-text format
comment VisibleString, -- this is where descriptions go
reference Pub, -- a citation describing the domain
create-date Date, -- Date of first creation/dump
tax-source Org-ref, -- holds the highest common tax node
source VisibleString, -- the database the seeds were created
-- from, e.g. SMART, PFAM, etc..
status INTEGER { unassigned(0),
finished-ok(1), -- a public curated CD
pending-release(2), -- needs work done, not yet released
other-asis(3), -- imported as-is, immediate release
matrix-only(4), -- CD holds a Psi-Blast PSSM only,
-- does not contain alignment data
update-running(5), -- has been flagged for
-- update (in queue)
auto-updated(6), -- update finished, no
-- work necessary
claimed(7), -- is earmarked for curation
curated-complete(8),-- public curated member of a
-- completed family
other(255) }, -- for CD production?
update-date Date, -- Date of last version change
scrapbook SEQUENCE OF VisibleString, -- for storing curation notes
-- those won't make it into public
-- distributions
source-id Cdd-id-set, -- for linking back to source db
repeats Cdd-repeat, -- to record repeat counts
old-root Cdd-id-set, -- to record short-term history
curation-status INTEGER { unassigned(0), -- to record curation status
prein (1), -- when CD is checked out from
ofc (2), -- the tracking database, for
iac (3), -- use within curation software
ofv1 (4),
iav1 (5),
ofv2 (6),
iav2 (7),
postin (8),
other (255) },
readonly-status INTEGER { unassigned(0), -- to record read-only status
readonly (1), -- when CD is checked out from
readwrite (2), -- the tracking database, for
other (255) }, -- use within curation software
book-ref Cdd-book-ref, -- links to Entrez/books
attribution Pub, -- add citations and/or author names
title VisibleString -- hold short descriptive text
}