ExchangeSet
Defined in file docsum.asn
C++ class: CExchangeSet
ExchangeSet ::= SEQUENCE {
attlist SET {
--set-type: full dump; from query; single
-- refSNP
setType VisibleString OPTIONAL,
--content depth: brief XML (only refSNP properties and summary
-- subSNP element content); full XML (full refSNP, full subSNP content; all
-- flanking sequences)
setDepth VisibleString OPTIONAL,
--version number of docsum.asn/docsum.dtd
-- specification
specVersion VisibleString OPTIONAL,
dbSnpBuild INTEGER OPTIONAL, --build number of database for this export
generated VisibleString OPTIONAL --Generated date
},
sourceDatabase SEQUENCE {
attlist SET {
--NCBI taxonomy ID for
-- variation
taxId INTEGER,
--common name for species used as part of database
-- name.
organism VisibleString,
dbSnpOrgAbbr VisibleString OPTIONAL, --organism abbreviation used in dbSNP.
--organism abbreviation used within NCBI genome
-- pipeline data dumps.
gpipeOrgAbbr VisibleString OPTIONAL
},
sourceDatabase NULL
} OPTIONAL,
rs SEQUENCE OF Rs OPTIONAL,
assay Assay OPTIONAL,
query SEQUENCE {
attlist SET {
date VisibleString OPTIONAL, --yyyy-mm-dd
--Query terms or search
-- constraints
string VisibleString OPTIONAL
},
query NULL
} OPTIONAL,
summary SEQUENCE {
attlist SET {
numRsIds INTEGER OPTIONAL, --Total number of refsnp-ids in this exchange set
--Total length of exemplar flanking
-- sequences
totalSeqLength INTEGER OPTIONAL,
--Total number of contig locations from
-- SNPContigLoc
numContigHits INTEGER OPTIONAL,
--Total number of locus ids from
-- SNPContigLocusId
numGeneHits INTEGER OPTIONAL,
--Total number of gi hits from
-- MapLink
numGiHits INTEGER OPTIONAL,
--Total number of 3D structures from
-- SNP3D
num3dStructs INTEGER OPTIONAL,
--Total number of allele frequences from
-- SubPopAllele
numAlleleFreqs INTEGER OPTIONAL,
--Total number of STS hits from
-- SnpInSts
numStsHits INTEGER OPTIONAL,
--Total number of unigene cluster ids from
-- UnigeneSnp
numUnigeneCids INTEGER OPTIONAL
},
summary NULL
} OPTIONAL,
baseURL SEQUENCE OF BaseURL OPTIONAL
}