Hsp

Defined in file blastxml.asn
C++ class: CHsp


Hsp ::= SEQUENCE {
	num INTEGER ,			-- HSP number
	bit-score REAL ,		-- score (in bits) of HSP
	score REAL ,			-- score of HSP
	evalue REAL ,			-- e-value of HSP
	query-from INTEGER ,		-- start of HSP in query
	query-to INTEGER ,		-- end of HSP
	hit-from INTEGER,		-- start of HSP in subject
	hit-to INTEGER ,		-- end of HSP in subject
	pattern-from INTEGER OPTIONAL ,	-- start of PHI-BLAST pattern
	pattern-to INTEGER OPTIONAL ,	-- end of PHI-BLAST pattern
	query-frame INTEGER OPTIONAL ,	-- translation frame of query
	hit-frame INTEGER OPTIONAL ,	-- translation frame of subject
	identity INTEGER OPTIONAL ,	-- number of identities in HSP
	positive INTEGER OPTIONAL ,	-- number of positives in HSP
	gaps INTEGER OPTIONAL ,		-- number of gaps in HSP
	align-len INTEGER OPTIONAL ,	-- length of the alignment used
	density INTEGER OPTIONAL ,	-- score density
	qseq VisibleString ,		-- alignment string for the query (with gaps)
	hseq VisibleString,		-- alignment string for subject (with gaps)
	midline VisibleString OPTIONAL	-- formating middle line
}