PssmWithParameters
Defined in file scoremat.asn
C++ class: CPssmWithParameters
PssmWithParameters ::= SEQUENCE {
-- This field is applicable to PSI-BLAST and formatrpsdb.
-- When both the intermediate and final PSSM data are provided in this
-- field, the final data (matrix of scores and associated statistical
-- parameters) takes precedence and that data is used for further
-- processing. The rationale for this is that the PSSM's scores and
-- statistical parameters might have been calculated by other applications
-- and it might not be possible to recreate it by using PSI-BLAST's PSSM
-- engine.
pssm Pssm,
-- This field's rpsdbparams is used to specify the values of options
-- for processing by formatrpsdb. If these are not set, the command
-- line defaults of formatrpsdb are applied. This field is used
-- by PSI-BLAST to verify that the underlying scorem matrix used to BUILD
-- the PSSM is the same as the one being specified through the BLAST
-- Options API. If this field is omitted, no verification will be
-- performed, so be careful to keep track of what matrix was used to build
-- the PSSM or else the results produced by PSI-BLAST will be unreliable.
params PssmParameters OPTIONAL
}