Seq-align
Defined in file seqalign.asn
C++ class: CSeq_align
Seq-align ::= SEQUENCE {
type ENUMERATED {
not-set (0) ,
global (1) ,
diags (2) , -- unbroken, but not ordered, diagonals
partial (3) , -- mapping pieces together
disc (4) , -- discontinuous alignment
other (255) } ,
dim INTEGER OPTIONAL , -- dimensionality
score SET OF Score OPTIONAL , -- for whole alignment
segs CHOICE { -- alignment data
dendiag SEQUENCE OF Dense-diag ,
denseg Dense-seg ,
std SEQUENCE OF Std-seg ,
packed Packed-seg ,
disc Seq-align-set,
spliced Spliced-seg,
sparse Sparse-seg
} ,
-- regions of sequence over which align
-- was computed
bounds SET OF Seq-loc OPTIONAL,
-- alignment id
id SEQUENCE OF Object-id OPTIONAL,
--extra info
ext SEQUENCE OF User-object OPTIONAL
}