Spliced-exon-chunk

Defined in file seqalign.asn
C++ class: CSpliced_exon_chunk


Spliced-exon-chunk ::= CHOICE {
    -- both sequences represented, product and genomic sequences match
    match INTEGER ,

    -- both sequences represented, product and genomic sequences do not match
    mismatch INTEGER ,

    -- both sequences are represented, there is sufficient similarity 
    -- between product and genomic sequences. Can be used to replace stretches
    -- of matches and mismatches, mostly for protein to genomic where 
    -- definition of match or mismatch depends on translation table
    diag INTEGER ,

     -- insertion in product sequence (i.e. gap in the genomic sequence)
    product-ins INTEGER ,

     -- insertion in genomic sequence (i.e. gap in the product sequence)
    genomic-ins INTEGER
}