Spliced-exon-chunk
Defined in file seqalign.asn
C++ class: CSpliced_exon_chunk
Spliced-exon-chunk ::= CHOICE {
-- both sequences represented, product and genomic sequences match
match INTEGER ,
-- both sequences represented, product and genomic sequences do not match
mismatch INTEGER ,
-- both sequences are represented, there is sufficient similarity
-- between product and genomic sequences. Can be used to replace stretches
-- of matches and mismatches, mostly for protein to genomic where
-- definition of match or mismatch depends on translation table
diag INTEGER ,
-- insertion in product sequence (i.e. gap in the genomic sequence)
product-ins INTEGER ,
-- insertion in genomic sequence (i.e. gap in the product sequence)
genomic-ins INTEGER
}