Ss

Defined in file docsum.asn
C++ class: CSs


Ss ::= SEQUENCE {
  attlist SET {
    ssId INTEGER, --dbSNP accession number for submission
    handle VisibleString, --Tag for the submitting laboratory
    batchId INTEGER, --dbSNP number for batch submission
    locSnpId VisibleString OPTIONAL, --submission (ss#) submitter ID
    
    --SubSNP classification by type of
    --						variation
    subSnpClass ENUMERATED {
      snp (1),
      in-del (2),
      heterozygous (3),
      microsatellite (4),
      named-locus (5),
      no-variation (6),
      mixed (7),
      multinucleotide-polymorphism (8)
    } OPTIONAL,
    
    --orientation of refsnp cluster members to refsnp cluster
    --						sequence
    orient ENUMERATED {
      forward (1),
      reverse (2)
    } OPTIONAL,
    
    --strand is defined as TOP/BOTTOM by nature of flanking
    --						nucleotide sequence
    strand ENUMERATED {
      top (1),
      bottom (2)
    } OPTIONAL,
    molType ENUMERATED {
      genomic (1),
      cDNA (2),
      mito (3),
      chloro (4),
      unknown (5)
    } OPTIONAL, --moltype from Batch table
    
    --dbSNP build number when ss# was added to a refSNP (rs#)
    --						cluster
    buildId INTEGER OPTIONAL,
    
    --class of method used to assay for the
    --						variation
    methodClass ENUMERATED {
      dHPLC (1),
      hybridize (2),
      computed (3),
      sSCP (4),
      other (5),
      unknown (6),
      rFLP (7),
      sequence (8)
    } OPTIONAL,
    
    --subsnp has been experimentally validated by
    --									submitter
    validated ENUMERATED {
      by-submitter (1),
      by-frequency (2),
      by-cluster (3)
    } OPTIONAL,
    
    --append loc-snp-id to this base URL to construct a pointer to
    --						submitter data.
    linkoutUrl VisibleString OPTIONAL,
    ssAlias VisibleString OPTIONAL,
    
    --				
    --					
    --						
    --						
    --						
    --						
    --						
    --						
    --						
    --						
    --					
    --				
    alleleOrigin INTEGER OPTIONAL,
    
    --				
    --					
    --						
    --						
    --						
    --						
    --						
    --						
    --						
    --					
    --				
    clinicalSignificance VisibleString OPTIONAL
  },
  sequence SEQUENCE {
    
    --5' sequence that flanks the
    --										variation
    seq5 VisibleString OPTIONAL,
    
    --list of all nucleotide alleles observed in
    --										ss-list members, correcting for reverse complementation of
    --										memebers reported in reverse orientation
    observed VisibleString,
    
    --3' sequence that flanks the
    --										variation
    seq3 VisibleString OPTIONAL
  }
}