src/objects/submit/submit.asn

--$Revision: 32084 $
--********************************************************************
--
--  Direct Submission of Sequence Data
--  James Ostell, 1991
--
--  This is a trial specification for direct submission of sequence
--    data worked out between NCBI and EMBL
--  Later revised to reflect work with GenBank and Integrated database
--
--  Version 3.0, 1994
--    This is the official NCBI sequence submission format now.
--
--********************************************************************

NCBI-Submit DEFINITIONS ::=
BEGIN

EXPORTS Seq-submit, Contact-info;

IMPORTS Cit-sub, Author FROM NCBI-Biblio
        Date, Object-id FROM NCBI-General
        Seq-annot FROM NCBI-Sequence
        Seq-id FROM NCBI-Seqloc
        Seq-entry FROM NCBI-Seqset;

Seq-submit ::= SEQUENCE {
    sub Submit-block ,
    data CHOICE {
        entrys  SET OF Seq-entry ,  -- sequence(s)
        annots  SET OF Seq-annot ,  -- annotation(s)
        delete  SET OF Seq-id } } -- deletions of entries

Submit-block ::= SEQUENCE {
    contact Contact-info ,        -- who to contact
    cit Cit-sub ,                 -- citation for this submission
    hup BOOLEAN DEFAULT FALSE ,   -- hold until publish
    reldate Date OPTIONAL ,       -- release by date
    subtype INTEGER {             -- type of submission
        new (1) ,                 -- new data
        update (2) ,              -- update by author
        revision (3) ,            -- 3rd party (non-author) update
        other (255) } OPTIONAL ,
    tool VisibleString OPTIONAL,  -- tool used to make submission
    user-tag VisibleString OPTIONAL, -- user supplied id for this submission
    comment VisibleString OPTIONAL } -- user comments/advice to database

Contact-info ::= SEQUENCE {      -- who to contact to discuss the submission
    name VisibleString OPTIONAL ,        -- OBSOLETE: will be removed
    address SEQUENCE OF VisibleString OPTIONAL ,
    phone VisibleString OPTIONAL ,
    fax VisibleString OPTIONAL ,
    email VisibleString OPTIONAL ,
    telex VisibleString OPTIONAL ,
    owner-id Object-id OPTIONAL ,         -- for owner accounts
    password OCTET STRING OPTIONAL ,
    last-name VisibleString OPTIONAL ,  -- structured to replace name above
    first-name VisibleString OPTIONAL ,
    middle-initial VisibleString OPTIONAL ,
    contact Author OPTIONAL }           -- WARNING: this will replace the above

END