NCBI C++ ToolKit
Bioseq_.cpp
Go to the documentation of this file.

Go to the SVN repository for this file.

1 /* $Id$
2  * ===========================================================================
3  *
4  * PUBLIC DOMAIN NOTICE
5  * National Center for Biotechnology Information
6  *
7  * This software/database is a "United States Government Work" under the
8  * terms of the United States Copyright Act. It was written as part of
9  * the author's official duties as a United States Government employee and
10  * thus cannot be copyrighted. This software/database is freely available
11  * to the public for use. The National Library of Medicine and the U.S.
12  * Government have not placed any restriction on its use or reproduction.
13  *
14  * Although all reasonable efforts have been taken to ensure the accuracy
15  * and reliability of the software and data, the NLM and the U.S.
16  * Government do not and cannot warrant the performance or results that
17  * may be obtained by using this software or data. The NLM and the U.S.
18  * Government disclaim all warranties, express or implied, including
19  * warranties of performance, merchantability or fitness for any particular
20  * purpose.
21  *
22  * Please cite the author in any work or product based on this material.
23  *
24  * ===========================================================================
25  *
26  * File Description:
27  * This code was generated by application DATATOOL
28  * using the following specifications:
29  * 'seq.asn'.
30  *
31  * ATTENTION:
32  * Don't edit or commit this file into CVS as this file will
33  * be overridden (by DATATOOL) without warning!
34  * ===========================================================================
35  */
36 
37 // standard includes
38 #include <ncbi_pch.hpp>
39 #include <serial/serialimpl.hpp>
40 
41 // generated includes
42 #include <objects/seq/Bioseq.hpp>
45 #include <objects/seq/Seq_inst.hpp>
48 
49 BEGIN_objects_SCOPE // namespace ncbi::objects::
50 
51 
52 // generated classes
53 
55 {
56  m_Id.clear();
57  m_set_State[0] &= ~0x3;
58 }
59 
61 {
62  m_Descr.Reset();
63 }
64 
66 {
67  m_Descr.Reset(&value);
68 }
69 
71 {
72  if ( !m_Descr )
73  m_Descr.Reset(new TDescr());
74  return (*m_Descr);
75 }
76 
78 {
79  if ( !m_Inst ) {
80  m_Inst.Reset(new TInst());
81  return;
82  }
83  (*m_Inst).Reset();
84 }
85 
87 {
88  m_Inst.Reset(&value);
89 }
90 
92 {
93  m_Annot.clear();
94  m_set_State[0] &= ~0xc0;
95 }
96 
98 {
99  ResetId();
100  ResetDescr();
101  ResetInst();
102  ResetAnnot();
103 }
104 
106 {
107  SET_CLASS_MODULE("NCBI-Sequence");
108  ADD_NAMED_MEMBER("id", m_Id, STL_list_set, (STL_CRef, (CLASS, (CSeq_id))))->SetSetFlag(MEMBER_PTR(m_set_State[0]));
109  ADD_NAMED_REF_MEMBER("descr", m_Descr, CSeq_descr)->SetOptional();
110  ADD_NAMED_REF_MEMBER("inst", m_Inst, CSeq_inst);
111  ADD_NAMED_MEMBER("annot", m_Annot, STL_list_set, (STL_CRef, (CLASS, (CSeq_annot))))->SetSetFlag(MEMBER_PTR(m_set_State[0]))->SetOptional();
112  info->RandomOrder();
113  info->CodeVersion(22400);
114  info->DataSpec(ncbi::EDataSpec::eASN);
115 }
117 
118 // constructor
120 {
121  memset(m_set_State,0,sizeof(m_set_State));
122  if ( !IsAllocatedInPool() ) {
123  ResetInst();
124  }
125 }
126 
127 // destructor
129 {
130 }
131 
132 
133 
134 END_objects_SCOPE // namespace ncbi::objects::
135 
137 
BEGIN_NAMED_BASE_CLASS_INFO("Bioseq", CBioseq)
Definition: Bioseq_.cpp:105
@Seq_descr.hpp User-defined methods of the data storage class.
Definition: Seq_descr.hpp:55
#define MEMBER_PTR(MemberName)
Definition: serialimpl.hpp:284
#define ADD_NAMED_MEMBER(MemberAlias, MemberName, TypeMacro, TypeMacroArgs)
Definition: serialimpl.hpp:342
#define ADD_NAMED_REF_MEMBER(MemberAlias, MemberName, ClassName)
Definition: serialimpl.hpp:357
#define END_CLASS_INFO
Definition: serialimpl.hpp:456
#define SET_CLASS_MODULE(ModuleName)
Definition: serialimpl.hpp:444
bool IsAllocatedInPool(void) const THROWS_NONE
Check if object is allocated in memory pool (not system heap)
Definition: ncbiobj.hpp:461
#define END_NCBI_SCOPE
End previously defined NCBI scope.
Definition: ncbistl.hpp:103
#define BEGIN_NCBI_SCOPE
Define ncbi namespace.
Definition: ncbistl.hpp:100
list< CRef< CSeq_id > > m_Id
Definition: Bioseq_.hpp:262
void ResetDescr(void)
Reset Descr data member.
Definition: Bioseq_.cpp:60
void ResetId(void)
Reset Id data member.
Definition: Bioseq_.cpp:54
CBioseq_Base(void)
Definition: Bioseq_.cpp:119
CRef< TDescr > m_Descr
Definition: Bioseq_.hpp:263
void ResetAnnot(void)
Reset Annot data member.
Definition: Bioseq_.cpp:91
CRef< TInst > m_Inst
Definition: Bioseq_.hpp:264
Uint4 m_set_State[1]
Definition: Bioseq_.hpp:261
virtual ~CBioseq_Base(void)
Definition: Bioseq_.cpp:128
TInst & SetInst(void)
Assign a value to Inst data member.
Definition: Bioseq_.hpp:345
virtual void Reset(void)
Reset the whole object.
Definition: Bioseq_.cpp:97
list< CRef< CSeq_annot > > m_Annot
Definition: Bioseq_.hpp:265
CSeq_inst TInst
Definition: Bioseq_.hpp:96
TDescr & SetDescr(void)
Assign a value to Descr data member.
Definition: Bioseq_.cpp:70
void ResetInst(void)
Reset Inst data member.
Definition: Bioseq_.cpp:77
CSeq_descr TDescr
Definition: Bioseq_.hpp:95
static MDB_envinfo info
Definition: mdb_load.c:37
const GenericPointer< typename T::ValueType > T2 value
Definition: pointer.h:1227
Modified on Fri May 24 14:50:49 2024 by modify_doxy.py rev. 669887