NCBI C++ ToolKit
Biostruc_align_seq_.cpp
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1 /* $Id$
2  * ===========================================================================
3  *
4  * PUBLIC DOMAIN NOTICE
5  * National Center for Biotechnology Information
6  *
7  * This software/database is a "United States Government Work" under the
8  * terms of the United States Copyright Act. It was written as part of
9  * the author's official duties as a United States Government employee and
10  * thus cannot be copyrighted. This software/database is freely available
11  * to the public for use. The National Library of Medicine and the U.S.
12  * Government have not placed any restriction on its use or reproduction.
13  *
14  * Although all reasonable efforts have been taken to ensure the accuracy
15  * and reliability of the software and data, the NLM and the U.S.
16  * Government do not and cannot warrant the performance or results that
17  * may be obtained by using this software or data. The NLM and the U.S.
18  * Government disclaim all warranties, express or implied, including
19  * warranties of performance, merchantability or fitness for any particular
20  * purpose.
21  *
22  * Please cite the author in any work or product based on this material.
23  *
24  * ===========================================================================
25  *
26  * File Description:
27  * This code was generated by application DATATOOL
28  * using the following specifications:
29  * 'ncbimime.asn'.
30  *
31  * ATTENTION:
32  * Don't edit or commit this file into CVS as this file will
33  * be overridden (by DATATOOL) without warning!
34  * ===========================================================================
35  */
36 
37 // standard includes
38 #include <ncbi_pch.hpp>
39 #include <serial/serialimpl.hpp>
40 
41 // generated includes
48 
49 BEGIN_objects_SCOPE // namespace ncbi::objects::
50 
51 
52 // generated classes
53 
55 {
56  m_Sequences.clear();
57  m_set_State[0] &= ~0x3;
58 }
59 
61 {
62  m_Seqalign.clear();
63  m_set_State[0] &= ~0xc;
64 }
65 
67 {
68  m_Style_dictionary.Reset();
69 }
70 
72 {
73  m_Style_dictionary.Reset(&value);
74 }
75 
77 {
78  if ( !m_Style_dictionary )
80  return (*m_Style_dictionary);
81 }
82 
84 {
85  m_User_annotations.Reset();
86 }
87 
89 {
90  m_User_annotations.Reset(&value);
91 }
92 
94 {
95  if ( !m_User_annotations )
97  return (*m_User_annotations);
98 }
99 
101 {
102  ResetSequences();
103  ResetSeqalign();
106 }
107 
109 {
110  SET_CLASS_MODULE("NCBI-Mime");
111  ADD_NAMED_MEMBER("sequences", m_Sequences, STL_list_set, (STL_CRef, (CLASS, (CSeq_entry))))->SetSetFlag(MEMBER_PTR(m_set_State[0]));
112  ADD_NAMED_MEMBER("seqalign", m_Seqalign, STL_list_set, (STL_CRef, (CLASS, (CSeq_annot))))->SetSetFlag(MEMBER_PTR(m_set_State[0]));
113  ADD_NAMED_REF_MEMBER("style-dictionary", m_Style_dictionary, CCn3d_style_dictionary)->SetOptional();
114  ADD_NAMED_REF_MEMBER("user-annotations", m_User_annotations, CCn3d_user_annotations)->SetOptional();
115  info->RandomOrder();
116  info->CodeVersion(22400);
117  info->DataSpec(ncbi::EDataSpec::eASN);
118 }
120 
121 // constructor
123 {
124  memset(m_set_State,0,sizeof(m_set_State));
125 }
126 
127 // destructor
129 {
130 }
131 
132 
133 
134 END_objects_SCOPE // namespace ncbi::objects::
135 
137 
User-defined methods of the data storage class.
BEGIN_NAMED_BASE_CLASS_INFO("Biostruc-align-seq", CBiostruc_align_seq)
User-defined methods of the data storage class.
User-defined methods of the data storage class.
CBiostruc_align_seq –.
CCn3d_style_dictionary –.
CCn3d_user_annotations –.
Definition: Seq_entry.hpp:56
#define MEMBER_PTR(MemberName)
Definition: serialimpl.hpp:284
#define ADD_NAMED_MEMBER(MemberAlias, MemberName, TypeMacro, TypeMacroArgs)
Definition: serialimpl.hpp:342
#define ADD_NAMED_REF_MEMBER(MemberAlias, MemberName, ClassName)
Definition: serialimpl.hpp:357
#define END_CLASS_INFO
Definition: serialimpl.hpp:456
#define SET_CLASS_MODULE(ModuleName)
Definition: serialimpl.hpp:444
#define END_NCBI_SCOPE
End previously defined NCBI scope.
Definition: ncbistl.hpp:103
#define BEGIN_NCBI_SCOPE
Define ncbi namespace.
Definition: ncbistl.hpp:100
list< CRef< CSeq_annot > > m_Seqalign
TStyle_dictionary & SetStyle_dictionary(void)
Assign a value to Style_dictionary data member.
void ResetSeqalign(void)
Reset Seqalign data member.
CRef< TStyle_dictionary > m_Style_dictionary
void ResetSequences(void)
Reset Sequences data member.
CCn3d_user_annotations TUser_annotations
virtual void Reset(void)
Reset the whole object.
CCn3d_style_dictionary TStyle_dictionary
CRef< TUser_annotations > m_User_annotations
TUser_annotations & SetUser_annotations(void)
Assign a value to User_annotations data member.
list< CRef< CSeq_entry > > m_Sequences
void ResetUser_annotations(void)
Reset User_annotations data member.
void ResetStyle_dictionary(void)
Reset Style_dictionary data member.
static MDB_envinfo info
Definition: mdb_load.c:37
const GenericPointer< typename T::ValueType > T2 value
Definition: pointer.h:1227
Modified on Sat May 25 14:21:08 2024 by modify_doxy.py rev. 669887