NCBI C++ ToolKit
Biostruc_seqs_.cpp
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1 /* $Id$
2  * ===========================================================================
3  *
4  * PUBLIC DOMAIN NOTICE
5  * National Center for Biotechnology Information
6  *
7  * This software/database is a "United States Government Work" under the
8  * terms of the United States Copyright Act. It was written as part of
9  * the author's official duties as a United States Government employee and
10  * thus cannot be copyrighted. This software/database is freely available
11  * to the public for use. The National Library of Medicine and the U.S.
12  * Government have not placed any restriction on its use or reproduction.
13  *
14  * Although all reasonable efforts have been taken to ensure the accuracy
15  * and reliability of the software and data, the NLM and the U.S.
16  * Government do not and cannot warrant the performance or results that
17  * may be obtained by using this software or data. The NLM and the U.S.
18  * Government disclaim all warranties, express or implied, including
19  * warranties of performance, merchantability or fitness for any particular
20  * purpose.
21  *
22  * Please cite the author in any work or product based on this material.
23  *
24  * ===========================================================================
25  *
26  * File Description:
27  * This code was generated by application DATATOOL
28  * using the following specifications:
29  * 'ncbimime.asn'.
30  *
31  * ATTENTION:
32  * Don't edit or commit this file into CVS as this file will
33  * be overridden (by DATATOOL) without warning!
34  * ===========================================================================
35  */
36 
37 // standard includes
38 #include <ncbi_pch.hpp>
39 #include <serial/serialimpl.hpp>
40 
41 // generated includes
49 
50 BEGIN_objects_SCOPE // namespace ncbi::objects::
51 
52 
53 // generated classes
54 
56 {
57  if ( !m_Structure ) {
58  m_Structure.Reset(new TStructure());
59  return;
60  }
61  (*m_Structure).Reset();
62 }
63 
65 {
66  m_Structure.Reset(&value);
67 }
68 
70 {
71  m_Sequences.clear();
72  m_set_State[0] &= ~0xc;
73 }
74 
76 {
77  m_Seqalign.clear();
78  m_set_State[0] &= ~0x30;
79 }
80 
82 {
83  m_Style_dictionary.Reset();
84 }
85 
87 {
88  m_Style_dictionary.Reset(&value);
89 }
90 
92 {
93  if ( !m_Style_dictionary )
95  return (*m_Style_dictionary);
96 }
97 
99 {
100  m_User_annotations.Reset();
101 }
102 
104 {
105  m_User_annotations.Reset(&value);
106 }
107 
109 {
110  if ( !m_User_annotations )
112  return (*m_User_annotations);
113 }
114 
116 {
117  ResetStructure();
118  ResetSequences();
119  ResetSeqalign();
122 }
123 
125 {
126  SET_CLASS_MODULE("NCBI-Mime");
127  ADD_NAMED_REF_MEMBER("structure", m_Structure, CBiostruc);
128  ADD_NAMED_MEMBER("sequences", m_Sequences, STL_list_set, (STL_CRef, (CLASS, (CSeq_entry))))->SetSetFlag(MEMBER_PTR(m_set_State[0]));
129  ADD_NAMED_MEMBER("seqalign", m_Seqalign, STL_list_set, (STL_CRef, (CLASS, (CSeq_annot))))->SetSetFlag(MEMBER_PTR(m_set_State[0]));
130  ADD_NAMED_REF_MEMBER("style-dictionary", m_Style_dictionary, CCn3d_style_dictionary)->SetOptional();
131  ADD_NAMED_REF_MEMBER("user-annotations", m_User_annotations, CCn3d_user_annotations)->SetOptional();
132  info->RandomOrder();
133  info->CodeVersion(22400);
134  info->DataSpec(ncbi::EDataSpec::eASN);
135 }
137 
138 // constructor
140 {
141  memset(m_set_State,0,sizeof(m_set_State));
142  if ( !IsAllocatedInPool() ) {
143  ResetStructure();
144  }
145 }
146 
147 // destructor
149 {
150 }
151 
152 
153 
154 END_objects_SCOPE // namespace ncbi::objects::
155 
157 
User-defined methods of the data storage class.
User-defined methods of the data storage class.
BEGIN_NAMED_BASE_CLASS_INFO("Biostruc-seqs", CBiostruc_seqs)
User-defined methods of the data storage class.
User-defined methods of the data storage class.
CBiostruc_seqs –.
CCn3d_style_dictionary –.
CCn3d_user_annotations –.
Definition: Seq_entry.hpp:56
#define MEMBER_PTR(MemberName)
Definition: serialimpl.hpp:284
#define ADD_NAMED_MEMBER(MemberAlias, MemberName, TypeMacro, TypeMacroArgs)
Definition: serialimpl.hpp:342
#define ADD_NAMED_REF_MEMBER(MemberAlias, MemberName, ClassName)
Definition: serialimpl.hpp:357
#define END_CLASS_INFO
Definition: serialimpl.hpp:456
#define SET_CLASS_MODULE(ModuleName)
Definition: serialimpl.hpp:444
bool IsAllocatedInPool(void) const THROWS_NONE
Check if object is allocated in memory pool (not system heap)
Definition: ncbiobj.hpp:461
#define END_NCBI_SCOPE
End previously defined NCBI scope.
Definition: ncbistl.hpp:103
#define BEGIN_NCBI_SCOPE
Define ncbi namespace.
Definition: ncbistl.hpp:100
TStructure & SetStructure(void)
Assign a value to Structure data member.
void ResetSeqalign(void)
Reset Seqalign data member.
list< CRef< CSeq_annot > > m_Seqalign
list< CRef< CSeq_entry > > m_Sequences
virtual ~CBiostruc_seqs_Base(void)
void ResetStyle_dictionary(void)
Reset Style_dictionary data member.
CCn3d_user_annotations TUser_annotations
void ResetStructure(void)
Reset Structure data member.
CRef< TStyle_dictionary > m_Style_dictionary
void ResetSequences(void)
Reset Sequences data member.
TStyle_dictionary & SetStyle_dictionary(void)
Assign a value to Style_dictionary data member.
CRef< TUser_annotations > m_User_annotations
CRef< TStructure > m_Structure
virtual void Reset(void)
Reset the whole object.
void ResetUser_annotations(void)
Reset User_annotations data member.
CCn3d_style_dictionary TStyle_dictionary
TUser_annotations & SetUser_annotations(void)
Assign a value to User_annotations data member.
static MDB_envinfo info
Definition: mdb_load.c:37
const GenericPointer< typename T::ValueType > T2 value
Definition: pointer.h:1227
Modified on Mon May 27 04:35:52 2024 by modify_doxy.py rev. 669887