NCBI C++ ToolKit
Blast4_queries_.cpp
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1 /* $Id$
2  * ===========================================================================
3  *
4  * PUBLIC DOMAIN NOTICE
5  * National Center for Biotechnology Information
6  *
7  * This software/database is a "United States Government Work" under the
8  * terms of the United States Copyright Act. It was written as part of
9  * the author's official duties as a United States Government employee and
10  * thus cannot be copyrighted. This software/database is freely available
11  * to the public for use. The National Library of Medicine and the U.S.
12  * Government have not placed any restriction on its use or reproduction.
13  *
14  * Although all reasonable efforts have been taken to ensure the accuracy
15  * and reliability of the software and data, the NLM and the U.S.
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17  * may be obtained by using this software or data. The NLM and the U.S.
18  * Government disclaim all warranties, express or implied, including
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20  * purpose.
21  *
22  * Please cite the author in any work or product based on this material.
23  *
24  * ===========================================================================
25  *
26  * File Description:
27  * This code was generated by application DATATOOL
28  * using the following specifications:
29  * 'blast.asn'.
30  *
31  * ATTENTION:
32  * Don't edit or commit this file into CVS as this file will
33  * be overridden (by DATATOOL) without warning!
34  * ===========================================================================
35  */
36 
37 // standard includes
38 #include <ncbi_pch.hpp>
39 #include <serial/serialimpl.hpp>
40 
41 // generated includes
47 
48 BEGIN_objects_SCOPE // namespace ncbi::objects::
49 
50 
51 // generated classes
52 
54 {
55  if ( m_choice != e_not_set )
57 }
58 
60 {
61  switch ( m_choice ) {
62  case e_Seq_loc_list:
63  m_Seq_loc_list.Destruct();
64  break;
65  case e_Pssm:
66  case e_Bioseq_set:
67  m_object->RemoveReference();
68  break;
69  default:
70  break;
71  }
73 }
74 
75 void CBlast4_queries_Base::DoSelect(E_Choice index, NCBI_NS_NCBI::CObjectMemoryPool* pool)
76 {
77  switch ( index ) {
78  case e_Pssm:
79  (m_object = new(pool) ncbi::objects::CPssmWithParameters())->AddReference();
80  break;
81  case e_Seq_loc_list:
82  m_Seq_loc_list.Construct();
83  break;
84  case e_Bioseq_set:
85  (m_object = new(pool) ncbi::objects::CBioseq_set())->AddReference();
86  break;
87  default:
88  break;
89  }
90  m_choice = index;
91 }
92 
93 const char* const CBlast4_queries_Base::sm_SelectionNames[] = {
94  "not set",
95  "pssm",
96  "seq-loc-list",
97  "bioseq-set"
98 };
99 
101 {
102  return NCBI_NS_NCBI::CInvalidChoiceSelection::GetName(index, sm_SelectionNames, sizeof(sm_SelectionNames)/sizeof(sm_SelectionNames[0]));
103 }
104 
106 {
107  throw NCBI_NS_NCBI::CInvalidChoiceSelection(DIAG_COMPILE_INFO, this, m_choice, index, sm_SelectionNames, sizeof(sm_SelectionNames)/sizeof(sm_SelectionNames[0]));
108 }
109 
111 {
113  return *static_cast<const TPssm*>(m_object);
114 }
115 
117 {
119  return *static_cast<TPssm*>(m_object);
120 }
121 
123 {
124  TPssm* ptr = &value;
125  if ( m_choice != e_Pssm || m_object != ptr ) {
126  ResetSelection();
127  (m_object = ptr)->AddReference();
128  m_choice = e_Pssm;
129  }
130 }
131 
133 {
135  return *static_cast<const TBioseq_set*>(m_object);
136 }
137 
139 {
141  return *static_cast<TBioseq_set*>(m_object);
142 }
143 
145 {
146  TBioseq_set* ptr = &value;
147  if ( m_choice != e_Bioseq_set || m_object != ptr ) {
148  ResetSelection();
149  (m_object = ptr)->AddReference();
151  }
152 }
153 
154 // helper methods
155 
156 // type info
158 {
159  SET_CHOICE_MODULE("NCBI-Blast4");
161  ADD_NAMED_BUF_CHOICE_VARIANT("seq-loc-list", m_Seq_loc_list, STL_list, (STL_CRef, (CLASS, (CSeq_loc))));
162  ADD_NAMED_REF_CHOICE_VARIANT("bioseq-set", m_object, CBioseq_set);
163  info->CodeVersion(22400);
164  info->DataSpec(ncbi::EDataSpec::eASN);
165 }
167 
168 // constructor
170  : m_choice(e_not_set)
171 {
172 }
173 
174 // destructor
176 {
177  Reset();
178 }
179 
180 
181 
182 END_objects_SCOPE // namespace ncbi::objects::
183 
185 
User-defined methods of the data storage class.
BEGIN_NAMED_BASE_CHOICE_INFO("Blast4-queries", CBlast4_queries)
User-defined methods of the data storage class.
string
Definition: cgiapp.hpp:687
#define DIAG_COMPILE_INFO
Make compile time diagnostic information object to use in CNcbiDiag and CException.
Definition: ncbidiag.hpp:170
#define ADD_NAMED_REF_CHOICE_VARIANT(MemberAlias, MemberName, ClassName)
Definition: serialimpl.hpp:400
#define END_CHOICE_INFO
Definition: serialimpl.hpp:506
#define SET_CHOICE_MODULE(ModuleName)
Definition: serialimpl.hpp:500
#define ADD_NAMED_BUF_CHOICE_VARIANT(MemberAlias, MemberName, TypeMacro, TypeMacroArgs)
Definition: serialimpl.hpp:385
@ eDoNotResetVariant
Definition: serialbase.hpp:78
void AddReference(void) const
Add reference to object.
Definition: ncbiobj.hpp:489
#define END_NCBI_SCOPE
End previously defined NCBI scope.
Definition: ncbistl.hpp:103
#define BEGIN_NCBI_SCOPE
Define ncbi namespace.
Definition: ncbistl.hpp:100
void CheckSelected(E_Choice index) const
Verify selection, throw exception if it differs from the expected.
static const char *const sm_SelectionNames[]
virtual ~CBlast4_queries_Base(void)
const TBioseq_set & GetBioseq_set(void) const
Get the variant data.
TBioseq_set & SetBioseq_set(void)
Select the variant.
void Select(E_Choice index, EResetVariant reset=eDoResetVariant)
Select the requested variant if needed.
const TPssm & GetPssm(void) const
Get the variant data.
static string SelectionName(E_Choice index)
Retrieve selection name (for diagnostic purposes).
virtual void Reset(void)
Reset the whole object.
E_Choice
Choice variants.
NCBI_NS_NCBI::CSerialObject * m_object
void ThrowInvalidSelection(E_Choice index) const
Throw 'InvalidSelection' exception.
NCBI_NS_NCBI::CUnionBuffer< TSeq_loc_list > m_Seq_loc_list
virtual void ResetSelection(void)
Reset the selection (set it to e_not_set).
TPssm & SetPssm(void)
Select the variant.
void DoSelect(E_Choice index, CObjectMemoryPool *pool=0)
@ e_not_set
No variant selected.
@ e_not_set
static MDB_envinfo info
Definition: mdb_load.c:37
const GenericPointer< typename T::ValueType > T2 value
Definition: pointer.h:1227
Modified on Mon Jun 17 05:05:08 2024 by modify_doxy.py rev. 669887