NCBI C++ ToolKit
Component_.cpp
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1 /* $Id$
2  * ===========================================================================
3  *
4  * PUBLIC DOMAIN NOTICE
5  * National Center for Biotechnology Information
6  *
7  * This software/database is a "United States Government Work" under the
8  * terms of the United States Copyright Act. It was written as part of
9  * the author's official duties as a United States Government employee and
10  * thus cannot be copyrighted. This software/database is freely available
11  * to the public for use. The National Library of Medicine and the U.S.
12  * Government have not placed any restriction on its use or reproduction.
13  *
14  * Although all reasonable efforts have been taken to ensure the accuracy
15  * and reliability of the software and data, the NLM and the U.S.
16  * Government do not and cannot warrant the performance or results that
17  * may be obtained by using this software or data. The NLM and the U.S.
18  * Government disclaim all warranties, express or implied, including
19  * warranties of performance, merchantability or fitness for any particular
20  * purpose.
21  *
22  * Please cite the author in any work or product based on this material.
23  *
24  * ===========================================================================
25  *
26  * File Description:
27  * This code was generated by application DATATOOL
28  * using the following specifications:
29  * 'docsum.asn'.
30  *
31  * ATTENTION:
32  * Don't edit or commit this file into CVS as this file will
33  * be overridden (by DATATOOL) without warning!
34  * ===========================================================================
35  */
36 
37 // standard includes
38 #include <ncbi_pch.hpp>
39 #include <serial/serialimpl.hpp>
40 
41 // generated includes
45 
46 BEGIN_objects_SCOPE // namespace ncbi::objects::
47 
48 
49 // generated classes
50 
51 BEGIN_NAMED_ENUM_IN_INFO("", CComponent_Base::C_Attlist::, EAttlist_componentType, false)
52 {
53  SET_ENUM_INTERNAL_NAME("Component.attlist", "componentType");
54  SET_ENUM_MODULE("Docsum-3-4");
55  ADD_ENUM_VALUE("contig", eAttlist_componentType_contig);
56  ADD_ENUM_VALUE("mrna", eAttlist_componentType_mrna);
57 }
59 
60 BEGIN_NAMED_ENUM_IN_INFO("", CComponent_Base::C_Attlist::, EAttlist_orientation, false)
61 {
62  SET_ENUM_INTERNAL_NAME("Component.attlist", "orientation");
63  SET_ENUM_MODULE("Docsum-3-4");
64  ADD_ENUM_VALUE("fwd", eAttlist_orientation_fwd);
65  ADD_ENUM_VALUE("rev", eAttlist_orientation_rev);
66  ADD_ENUM_VALUE("unknown", eAttlist_orientation_unknown);
67 }
69 
71 {
72  m_Accession.erase();
73  m_set_State[0] &= ~0x30;
74 }
75 
77 {
78  m_Name.erase();
79  m_set_State[0] &= ~0xc0;
80 }
81 
83 {
84  m_Chromosome.erase();
85  m_set_State[0] &= ~0x300;
86 }
87 
89 {
90  m_Gi.erase();
91  m_set_State[0] &= ~0x30000;
92 }
93 
95 {
96  m_GroupTerm.erase();
97  m_set_State[0] &= ~0xc0000;
98 }
99 
101 {
102  m_ContigLabel.erase();
103  m_set_State[0] &= ~0x300000;
104 }
105 
107 {
108  ResetComponentType();
109  ResetCtgId();
110  ResetAccession();
111  ResetName();
112  ResetChromosome();
113  ResetStart();
114  ResetEnd();
115  ResetOrientation();
116  ResetGi();
117  ResetGroupTerm();
118  ResetContigLabel();
119 }
120 
122 {
123  SET_INTERNAL_NAME("Component", "attlist");
124  SET_CLASS_MODULE("Docsum-3-4");
125  ADD_NAMED_ENUM_MEMBER("componentType", m_ComponentType, EAttlist_componentType)->SetSetFlag(MEMBER_PTR(m_set_State[0]))->SetOptional();
126  ADD_NAMED_STD_MEMBER("ctgId", m_CtgId)->SetSetFlag(MEMBER_PTR(m_set_State[0]))->SetOptional();
127  ADD_NAMED_STD_MEMBER("accession", m_Accession)->SetSetFlag(MEMBER_PTR(m_set_State[0]))->SetOptional();
128  ADD_NAMED_STD_MEMBER("name", m_Name)->SetSetFlag(MEMBER_PTR(m_set_State[0]))->SetOptional();
129  ADD_NAMED_STD_MEMBER("chromosome", m_Chromosome)->SetSetFlag(MEMBER_PTR(m_set_State[0]))->SetOptional();
130  ADD_NAMED_STD_MEMBER("start", m_Start)->SetSetFlag(MEMBER_PTR(m_set_State[0]))->SetOptional();
131  ADD_NAMED_STD_MEMBER("end", m_End)->SetSetFlag(MEMBER_PTR(m_set_State[0]))->SetOptional();
132  ADD_NAMED_ENUM_MEMBER("orientation", m_Orientation, EAttlist_orientation)->SetSetFlag(MEMBER_PTR(m_set_State[0]))->SetOptional();
133  ADD_NAMED_STD_MEMBER("gi", m_Gi)->SetSetFlag(MEMBER_PTR(m_set_State[0]))->SetOptional();
134  ADD_NAMED_STD_MEMBER("groupTerm", m_GroupTerm)->SetSetFlag(MEMBER_PTR(m_set_State[0]))->SetOptional();
135  ADD_NAMED_STD_MEMBER("contigLabel", m_ContigLabel)->SetSetFlag(MEMBER_PTR(m_set_State[0]))->SetOptional();
136  info->SetRandomOrder(true);
137  info->CodeVersion(22400);
138  info->DataSpec(ncbi::EDataSpec::eASN);
139 }
141 
142 // constructor
144  : m_ComponentType((EAttlist_componentType)(0)), m_CtgId(0), m_Start(0), m_End(0), m_Orientation((EAttlist_orientation)(0))
145 {
146  memset(m_set_State,0,sizeof(m_set_State));
147 }
148 
149 // destructor
151 {
152 }
153 
154 
156 {
157  if ( !m_Attlist ) {
158  m_Attlist.Reset(new TAttlist());
159  return;
160  }
161  (*m_Attlist).Reset();
162 }
163 
165 {
166  m_Attlist.Reset(&value);
167 }
168 
170 {
171  m_MapLoc.clear();
172  m_set_State[0] &= ~0xc;
173 }
174 
176 {
177  ResetAttlist();
178  ResetMapLoc();
179 }
180 
182 {
183  SET_CLASS_MODULE("Docsum-3-4");
184  ADD_NAMED_REF_MEMBER("attlist", m_Attlist, C_Attlist);
185  ADD_NAMED_MEMBER("mapLoc", m_MapLoc, STL_list, (STL_CRef, (CLASS, (CMapLoc))))->SetSetFlag(MEMBER_PTR(m_set_State[0]));
186  info->RandomOrder();
187  info->CodeVersion(22400);
188  info->DataSpec(ncbi::EDataSpec::eASN);
189 }
191 
192 // constructor
194 {
195  memset(m_set_State,0,sizeof(m_set_State));
196  if ( !IsAllocatedInPool() ) {
197  ResetAttlist();
198  }
199 }
200 
201 // destructor
203 {
204 }
205 
206 
207 
208 END_objects_SCOPE // namespace ncbi::objects::
209 
211 
User-defined methods of the data storage class.
BEGIN_NAMED_ENUM_IN_INFO("", CComponent_Base::C_Attlist::, EAttlist_componentType, false)
Definition: Component_.cpp:51
BEGIN_NAMED_BASE_CLASS_INFO("Component", CComponent)
Definition: Component_.cpp:181
BEGIN_NAMED_CLASS_INFO("", CComponent_Base::C_Attlist)
Definition: Component_.cpp:121
User-defined methods of the data storage class.
END_ENUM_INFO
Definition: aln_errors.cpp:58
CComponent –.
Definition: Component.hpp:66
CMapLoc –.
Definition: MapLoc.hpp:66
#define MEMBER_PTR(MemberName)
Definition: serialimpl.hpp:284
#define SET_ENUM_INTERNAL_NAME(OwnerName, MemberName)
Definition: serialimpl.hpp:559
#define ADD_NAMED_MEMBER(MemberAlias, MemberName, TypeMacro, TypeMacroArgs)
Definition: serialimpl.hpp:342
#define ADD_NAMED_REF_MEMBER(MemberAlias, MemberName, ClassName)
Definition: serialimpl.hpp:357
#define SET_ENUM_MODULE(ModuleName)
Definition: serialimpl.hpp:553
#define END_CLASS_INFO
Definition: serialimpl.hpp:456
#define ADD_NAMED_STD_MEMBER(MemberAlias, MemberName)
Definition: serialimpl.hpp:345
#define SET_CLASS_MODULE(ModuleName)
Definition: serialimpl.hpp:444
#define ADD_NAMED_ENUM_MEMBER(MemberAlias, MemberName, EnumName)
Definition: serialimpl.hpp:351
#define ADD_ENUM_VALUE(EnumValueName, EnumValueValue)
Definition: serialimpl.hpp:562
#define SET_INTERNAL_NAME(OwnerName, MemberName)
Definition: serialimpl.hpp:447
bool IsAllocatedInPool(void) const THROWS_NONE
Check if object is allocated in memory pool (not system heap)
Definition: ncbiobj.hpp:461
#define END_NCBI_SCOPE
End previously defined NCBI scope.
Definition: ncbistl.hpp:103
#define BEGIN_NCBI_SCOPE
Define ncbi namespace.
Definition: ncbistl.hpp:100
void ResetMapLoc(void)
Reset MapLoc data member.
Definition: Component_.cpp:169
TAttlist & SetAttlist(void)
Assign a value to Attlist data member.
void Reset(void)
Reset the whole object.
Definition: Component_.cpp:106
C_Attlist TAttlist
Definition: Component_.hpp:616
virtual void Reset(void)
Reset the whole object.
Definition: Component_.cpp:175
void ResetName(void)
Reset Name data member.
Definition: Component_.cpp:76
Uint4 m_set_State[1]
Definition: Component_.hpp:708
void ResetChromosome(void)
Reset Chromosome data member.
Definition: Component_.cpp:82
EAttlist_componentType
type of component: chromosome, contig, gene_region, etc.
Definition: Component_.hpp:108
void ResetGroupTerm(void)
Reset GroupTerm data member.
Definition: Component_.cpp:94
void ResetAttlist(void)
Reset Attlist data member.
Definition: Component_.cpp:155
EAttlist_orientation
orientation of this component to chromosome, forward (fwd) = 0, reverse (rev) = 1,...
Definition: Component_.hpp:119
void ResetContigLabel(void)
Reset ContigLabel data member.
Definition: Component_.cpp:100
list< CRef< CMapLoc > > m_MapLoc
Definition: Component_.hpp:710
CRef< TAttlist > m_Attlist
Definition: Component_.hpp:709
virtual ~CComponent_Base(void)
Definition: Component_.cpp:202
void ResetGi(void)
Reset Gi data member.
Definition: Component_.cpp:88
void ResetAccession(void)
Reset Accession data member.
Definition: Component_.cpp:70
static MDB_envinfo info
Definition: mdb_load.c:37
const GenericPointer< typename T::ValueType > T2 value
Definition: pointer.h:1227
Modified on Mon Jul 15 05:36:29 2024 by modify_doxy.py rev. 669887