Dense_seg.cpp File Reference

#include <ncbi_pch.hpp>
#include <algorithm>
#include <objects/seqalign/seqalign_exception.hpp>
#include <objects/seqalign/Dense_seg.hpp>
#include <objects/seqloc/Seq_id.hpp>
#include <objects/seqloc/Seq_loc.hpp>
#include <serial/objistr.hpp>
#include <corelib/ncbi_param.hpp>

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Macros
#define	ASSERT_CONSISTENCY()
#define	IDX(_x, _y)   (((_x)*GetDim())+(_y))

Functions
	NCBI_PARAM_DECL (bool, OBJECTS, DENSE_SEG_RESERVE)
	NCBI_PARAM_DEF_EX (bool, OBJECTS, DENSE_SEG_RESERVE, true, eParam_NoThread, OBJECTS_DENSE_SEG_RESERVE)

Macro Definition Documentation

ASSERT_CONSISTENCY

#define ASSERT_CONSISTENCY

(

)

Value:

    do {                                                                \
        TNumseg numseg = GetNumseg();                                   \
        TDim dim = GetDim();                                            \
        _ASSERT(numseg >= 0);                                           \
        _ASSERT(dim >= 0);                                              \
        _ASSERT(size_t(numseg) == GetLens().size());                    \
        _ASSERT(size_t(numseg) * dim == GetStarts().size());            \
        _ASSERT(!IsSetStrands() || GetStarts().size() == GetStrands().size()); \
        _ASSERT(size_t(dim) == GetIds().size());                        \
    } while (false)

Definition at line 77 of file Dense_seg.cpp.

IDX

#define IDX	(		_x,
			_y
	)		(((_x)*GetDim())+(_y))

Function Documentation

NCBI_PARAM_DECL()

NCBI_PARAM_DECL	(	bool	,
		OBJECTS	,
		DENSE_SEG_RESERVE
	)

NCBI_PARAM_DEF_EX()

NCBI_PARAM_DEF_EX	(	bool	,
		OBJECTS	,
		DENSE_SEG_RESERVE	,
		true	,
		eParam_NoThread	,
		OBJECTS_DENSE_SEG_RESERVE
	)