NCBI C++ ToolKit
ID2S_Sequence_Piece_.hpp
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27 
28 /// @file ID2S_Sequence_Piece_.hpp
29 /// Data storage class.
30 ///
31 /// This file was generated by application DATATOOL
32 /// using the following specifications:
33 /// <a href="/IEB/ToolBox/CPP_DOC/lxr/source/src/objects/seqsplit/seqsplit.asn">seqsplit.asn</a>
34 /// and additional tune-up parameters:
35 /// <a href="/IEB/ToolBox/CPP_DOC/lxr/source/src/objects/seqsplit/seqsplit.def">seqsplit.def</a>
36 ///
37 /// ATTENTION:
38 /// Don't edit or commit this file into CVS as this file will
39 /// be overridden (by DATATOOL) without warning!
40 
41 #ifndef OBJECTS_SEQSPLIT_ID2S_SEQUENCE_PIECE_BASE_HPP
42 #define OBJECTS_SEQSPLIT_ID2S_SEQUENCE_PIECE_BASE_HPP
43 
44 // standard includes
45 #include <serial/serialbase.hpp>
46 
47 // generated includes
48 #include <list>
49 
51 
52 #ifndef BEGIN_objects_SCOPE
53 # define BEGIN_objects_SCOPE BEGIN_SCOPE(objects)
54 # define END_objects_SCOPE END_SCOPE(objects)
55 #endif
56 BEGIN_objects_SCOPE // namespace ncbi::objects::
57 
58 
59 // forward declarations
60 class CSeq_literal;
61 
62 
63 // generated classes
64 
65 
66 /** @addtogroup dataspec_NCBI_Seq_split
67  *
68  * @{
69  */
70 
71 /////////////////////////////////////////////////////////////////////////////
72 ///
73 /// CID2S_Sequence_Piece_Base --
74 ///
75 
77 {
79 public:
80  // constructor
82  // destructor
83  virtual ~CID2S_Sequence_Piece_Base(void);
84 
85  // type info
87 
88  // types
89  typedef TSeqPos TStart;
90  typedef list< CRef< CSeq_literal > > TData;
91 
92  // member index
93  enum class E_memberIndex {
94  e__allMandatory = 0,
95  e_start,
96  e_data
97  };
99 
100  // getters
101  // setters
102 
103  /// start position on sequence
104  /// Check if a value has been assigned to Start data member.
105  ///
106  /// Data member Start is mandatory;
107  /// its type is defined as 'typedef TSeqPos TStart'
108  /// @return
109  /// - true, if a value has been assigned.
110  /// - false, otherwise.
111  bool IsSetStart(void) const;
112 
113  /// Check if it is safe to call GetStart method.
114  ///
115  /// @return
116  /// - true, if the data member is getatable.
117  /// - false, otherwise.
118  bool CanGetStart(void) const;
119 
120  /// Reset Start data member.
121  void ResetStart(void);
122 
123  /// Get the Start member data.
124  ///
125  /// @return
126  /// Copy of the member data.
127  TStart GetStart(void) const;
128 
129  /// Assign a value to Start data member.
130  ///
131  /// @param value
132  /// Value to assign
133  void SetStart(TStart value);
134 
135  /// Assign a value to Start data member.
136  ///
137  /// @return
138  /// Reference to the data value.
139  TStart& SetStart(void);
140 
141  /// Check if a value has been assigned to Data data member.
142  ///
143  /// Data member Data is mandatory;
144  /// its type is defined as 'typedef list< CRef< CSeq_literal > > TData'
145  /// @return
146  /// - true, if a value has been assigned.
147  /// - false, otherwise.
148  bool IsSetData(void) const;
149 
150  /// Check if it is safe to call GetData method.
151  ///
152  /// @return
153  /// - true, if the data member is getatable.
154  /// - false, otherwise.
155  bool CanGetData(void) const;
156 
157  /// Reset Data data member.
158  void ResetData(void);
159 
160  /// Get the Data member data.
161  ///
162  /// @return
163  /// Reference to the member data.
164  const TData& GetData(void) const;
165 
166  /// Assign a value to Data data member.
167  ///
168  /// @return
169  /// Reference to the data value.
170  TData& SetData(void);
171 
172  /// Reset the whole object
173  virtual void Reset(void);
174 
175 
176 private:
177  // Prohibit copy constructor and assignment operator
180 
181  // data
182  Uint4 m_set_State[1];
184  list< CRef< CSeq_literal > > m_Data;
185 };
186 
187 /* @} */
188 
189 
190 
191 
192 
193 ///////////////////////////////////////////////////////////
194 ///////////////////// inline methods //////////////////////
195 ///////////////////////////////////////////////////////////
196 inline
198 {
199  return ((m_set_State[0] & 0x3) != 0);
200 }
201 
202 inline
204 {
205  return IsSetStart();
206 }
207 
208 inline
210 {
211  m_Start = 0;
212  m_set_State[0] &= ~0x3;
213 }
214 
215 inline
217 {
218  if (!CanGetStart()) {
219  ThrowUnassigned(0);
220  }
221  return m_Start;
222 }
223 
224 inline
226 {
227  m_Start = value;
228  m_set_State[0] |= 0x3;
229 }
230 
231 inline
233 {
234 #ifdef _DEBUG
235  if (!IsSetStart()) {
236  memset(&m_Start,UnassignedByte(),sizeof(m_Start));
237  }
238 #endif
239  m_set_State[0] |= 0x1;
240  return m_Start;
241 }
242 
243 inline
245 {
246  return ((m_set_State[0] & 0xc) != 0);
247 }
248 
249 inline
251 {
252  return true;
253 }
254 
255 inline
257 {
258  return m_Data;
259 }
260 
261 inline
263 {
264  m_set_State[0] |= 0x4;
265  return m_Data;
266 }
267 
268 ///////////////////////////////////////////////////////////
269 ////////////////// end of inline methods //////////////////
270 ///////////////////////////////////////////////////////////
271 
272 
273 
274 
275 
276 END_objects_SCOPE // namespace ncbi::objects::
277 
279 
280 
281 #endif // OBJECTS_SEQSPLIT_ID2S_SEQUENCE_PIECE_BASE_HPP
CID2S_Sequence_Piece_Base –.
Base class for all serializable objects.
Definition: serialbase.hpp:150
unsigned int TSeqPos
Type for sequence locations and lengths.
Definition: ncbimisc.hpp:875
static char UnassignedByte(void)
Definition: serialbase.hpp:181
void ThrowUnassigned(TMemberIndex index) const
TSeqPos GetStart(const CSeq_loc &loc, CScope *scope, ESeqLocExtremes ext=eExtreme_Positional)
If only one CBioseq is represented by CSeq_loc, returns the position at the start of the location.
uint32_t Uint4
4-byte (32-bit) unsigned integer
Definition: ncbitype.h:103
#define END_NCBI_SCOPE
End previously defined NCBI scope.
Definition: ncbistl.hpp:103
#define BEGIN_NCBI_SCOPE
Define ncbi namespace.
Definition: ncbistl.hpp:100
#define NCBI_ID2_EXPORT
Definition: ncbi_export.h:552
CID2S_Sequence_Piece_Base & operator=(const CID2S_Sequence_Piece_Base &)
TStart GetStart(void) const
Get the Start member data.
list< CRef< CSeq_literal > > m_Data
void ResetStart(void)
Reset Start data member.
bool IsSetStart(void) const
start position on sequence Check if a value has been assigned to Start data member.
bool CanGetData(void) const
Check if it is safe to call GetData method.
CID2S_Sequence_Piece_Base(const CID2S_Sequence_Piece_Base &)
const TData & GetData(void) const
Get the Data member data.
list< CRef< CSeq_literal > > TData
bool CanGetStart(void) const
Check if it is safe to call GetStart method.
bool IsSetData(void) const
Check if a value has been assigned to Data data member.
Tparent::CMemberIndex< E_memberIndex, 3 > TmemberIndex
TData & SetData(void)
Assign a value to Data data member.
TStart & SetStart(void)
Assign a value to Start data member.
const GenericPointer< typename T::ValueType > T2 value
Definition: pointer.h:1227
Modified on Fri Sep 20 14:57:35 2024 by modify_doxy.py rev. 669887