NCBI C++ ToolKit
Packed_seg_.cpp
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1 /* $Id$
2  * ===========================================================================
3  *
4  * PUBLIC DOMAIN NOTICE
5  * National Center for Biotechnology Information
6  *
7  * This software/database is a "United States Government Work" under the
8  * terms of the United States Copyright Act. It was written as part of
9  * the author's official duties as a United States Government employee and
10  * thus cannot be copyrighted. This software/database is freely available
11  * to the public for use. The National Library of Medicine and the U.S.
12  * Government have not placed any restriction on its use or reproduction.
13  *
14  * Although all reasonable efforts have been taken to ensure the accuracy
15  * and reliability of the software and data, the NLM and the U.S.
16  * Government do not and cannot warrant the performance or results that
17  * may be obtained by using this software or data. The NLM and the U.S.
18  * Government disclaim all warranties, express or implied, including
19  * warranties of performance, merchantability or fitness for any particular
20  * purpose.
21  *
22  * Please cite the author in any work or product based on this material.
23  *
24  * ===========================================================================
25  *
26  * File Description:
27  * This code was generated by application DATATOOL
28  * using the following specifications:
29  * 'seqalign.asn'.
30  *
31  * ATTENTION:
32  * Don't edit or commit this file into CVS as this file will
33  * be overridden (by DATATOOL) without warning!
34  * ===========================================================================
35  */
36 
37 // standard includes
38 #include <ncbi_pch.hpp>
39 #include <serial/serialimpl.hpp>
40 
41 // generated includes
46 
47 BEGIN_objects_SCOPE // namespace ncbi::objects::
48 
49 
50 // generated classes
51 
53 {
54  m_Ids.clear();
55  m_set_State[0] &= ~0x30;
56 }
57 
59 {
60  m_Starts.clear();
61  m_set_State[0] &= ~0xc0;
62 }
63 
65 {
66  m_Present.clear();
67  m_set_State[0] &= ~0x300;
68 }
69 
71 {
72  m_Lens.clear();
73  m_set_State[0] &= ~0xc00;
74 }
75 
77 {
78  m_Strands.clear();
79  m_set_State[0] &= ~0x3000;
80 }
81 
83 {
84  m_Scores.clear();
85  m_set_State[0] &= ~0xc000;
86 }
87 
89 {
90  ResetDim();
91  ResetNumseg();
92  ResetIds();
93  ResetStarts();
94  ResetPresent();
95  ResetLens();
96  ResetStrands();
97  ResetScores();
98 }
99 
101 {
102  SET_CLASS_MODULE("NCBI-Seqalign");
103  ADD_NAMED_STD_MEMBER("dim", m_Dim)->SetDefault(new TDim(2))->SetSetFlag(MEMBER_PTR(m_set_State[0]))->SetOptional();
104  ADD_NAMED_STD_MEMBER("numseg", m_Numseg)->SetSetFlag(MEMBER_PTR(m_set_State[0]));
105  ADD_NAMED_MEMBER("ids", m_Ids, STL_vector, (STL_CRef, (CLASS, (CSeq_id))))->SetSetFlag(MEMBER_PTR(m_set_State[0]));
106  ADD_NAMED_MEMBER("starts", m_Starts, STL_vector, (STD, (TSeqPos)))->SetSetFlag(MEMBER_PTR(m_set_State[0]));
107  ADD_NAMED_MEMBER("present", m_Present, STL_CHAR_vector, (char))->SetSetFlag(MEMBER_PTR(m_set_State[0]));
108  ADD_NAMED_MEMBER("lens", m_Lens, STL_vector, (STD, (TSeqPos)))->SetSetFlag(MEMBER_PTR(m_set_State[0]));
109  ADD_NAMED_MEMBER("strands", m_Strands, STL_vector, (ENUM, (ENa_strand, ENa_strand)))->SetSetFlag(MEMBER_PTR(m_set_State[0]))->SetOptional();
110  ADD_NAMED_MEMBER("scores", m_Scores, STL_vector, (STL_CRef, (CLASS, (CScore))))->SetSetFlag(MEMBER_PTR(m_set_State[0]))->SetOptional();
111  info->RandomOrder();
112  info->CodeVersion(22400);
113  info->DataSpec(ncbi::EDataSpec::eASN);
114 }
116 
117 // constructor
119  : m_Dim(2), m_Numseg(0)
120 {
121  memset(m_set_State,0,sizeof(m_set_State));
122 }
123 
124 // destructor
126 {
127 }
128 
129 
130 
131 END_objects_SCOPE // namespace ncbi::objects::
132 
134 
User-defined methods of the data storage class.
BEGIN_NAMED_BASE_CLASS_INFO("Packed-seg", CPacked_seg)
User-defined methods of the data storage class.
CAnchoredAln::TDim TDim
CPacked_seg –.
Definition: Packed_seg.hpp:66
Definition: Score.hpp:57
unsigned int TSeqPos
Type for sequence locations and lengths.
Definition: ncbimisc.hpp:875
#define MEMBER_PTR(MemberName)
Definition: serialimpl.hpp:284
#define ADD_NAMED_MEMBER(MemberAlias, MemberName, TypeMacro, TypeMacroArgs)
Definition: serialimpl.hpp:342
#define END_CLASS_INFO
Definition: serialimpl.hpp:456
#define ADD_NAMED_STD_MEMBER(MemberAlias, MemberName)
Definition: serialimpl.hpp:345
#define SET_CLASS_MODULE(ModuleName)
Definition: serialimpl.hpp:444
#define END_NCBI_SCOPE
End previously defined NCBI scope.
Definition: ncbistl.hpp:103
#define BEGIN_NCBI_SCOPE
Define ncbi namespace.
Definition: ncbistl.hpp:100
void ResetScores(void)
Reset Scores data member.
Definition: Packed_seg_.cpp:82
void ResetLens(void)
Reset Lens data member.
Definition: Packed_seg_.cpp:70
vector< CRef< CSeq_id > > m_Ids
void ResetStarts(void)
Reset Starts data member.
Definition: Packed_seg_.cpp:58
void ResetPresent(void)
Reset Present data member.
Definition: Packed_seg_.cpp:64
virtual void Reset(void)
Reset the whole object.
Definition: Packed_seg_.cpp:88
vector< TSeqPos > m_Lens
vector< CRef< CScore > > m_Scores
Uint4 m_set_State[1]
vector< char > m_Present
void ResetDim(void)
Reset Dim data member.
vector< ENa_strand > m_Strands
virtual ~CPacked_seg_Base(void)
void ResetStrands(void)
Reset Strands data member.
Definition: Packed_seg_.cpp:76
vector< TSeqPos > m_Starts
void ResetIds(void)
Reset Ids data member.
Definition: Packed_seg_.cpp:52
void ResetNumseg(void)
Reset Numseg data member.
ENa_strand
strand of nucleic acid
Definition: Na_strand_.hpp:64
static MDB_envinfo info
Definition: mdb_load.c:37
Modified on Wed Apr 17 13:08:45 2024 by modify_doxy.py rev. 669887