69 !
GetQuery().GetSeq().GetInst().CanGetLength() ) {
83 !
GetQuery().GetSeq().GetInst().CanGetSeq_data() ) {
93 back_inserter(retval.
Set()));
97 back_inserter(retval.
Set()));
User-defined methods of the data storage class.
User-defined methods of the data storage class.
void SetHUngapped(double val)
double GetKappaUngapped() const
void GetQuerySequenceData(CNCBIstdaa &sequence) const
Retrieve the query sequence data in ncbistdaa format.
void SetLambdaUngapped(double val)
double GetLambdaUngapped() const
static const double kInvalidStat
double GetHUngapped() const
void SetKappa(double val)
SIZE_TYPE GetQueryLength() const
Return the query length or 0 if no query is available.
void SetKappaUngapped(double val)
void SetLambda(double val)
static TSeqPos Convert(const CSeq_data &in_seq, CSeq_data *out_seq, CSeq_data::E_Choice to_code, TSeqPos uBeginIdx=0, TSeqPos uLength=0, bool bAmbig=false, Uint4 seed=17734276)
const TPrim & Get(void) const
#define END_NCBI_SCOPE
End previously defined NCBI scope.
#define BEGIN_NCBI_SCOPE
Define ncbi namespace.
NCBI_NS_STD::string::size_type SIZE_TYPE
const TQuery & GetQuery(void) const
Get the Query member data.
void SetLambda(TLambda value)
Assign a value to Lambda data member.
TH GetH(void) const
Get the H member data.
TKappa GetKappa(void) const
Get the Kappa member data.
void SetKappaUngapped(TKappaUngapped value)
Assign a value to KappaUngapped data member.
void SetKappa(TKappa value)
Assign a value to Kappa data member.
const TFinalData & GetFinalData(void) const
Get the FinalData member data.
bool CanGetFinalData(void) const
Check if it is safe to call GetFinalData method.
void SetLambdaUngapped(TLambdaUngapped value)
Assign a value to LambdaUngapped data member.
void SetHUngapped(THUngapped value)
Assign a value to HUngapped data member.
THUngapped GetHUngapped(void) const
Get the HUngapped member data.
bool CanGetQuery(void) const
Check if it is safe to call GetQuery method.
TLambdaUngapped GetLambdaUngapped(void) const
Get the LambdaUngapped member data.
TKappaUngapped GetKappaUngapped(void) const
Get the KappaUngapped member data.
void SetH(TH value)
Assign a value to H data member.
TFinalData & SetFinalData(void)
Assign a value to FinalData data member.
TLambda GetLambda(void) const
Get the Lambda member data.
const TSeq & GetSeq(void) const
Get the variant data.
const TInst & GetInst(void) const
Get the Inst member data.
bool IsNcbistdaa(void) const
Check if variant Ncbistdaa is selected.
TLength GetLength(void) const
Get the Length member data.
const TNcbistdaa & GetNcbistdaa(void) const
Get the variant data.
const TSeq_data & GetSeq_data(void) const
Get the Seq_data member data.
@ e_Ncbistdaa
consecutive codes for std aas
void copy(Njn::Matrix< S > *matrix_, const Njn::Matrix< T > &matrix0_)