NCBI C++ ToolKit
Std_seg.hpp
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1 /* $Id: Std_seg.hpp 47385 2010-10-04 15:26:24Z grichenk $
2  * ===========================================================================
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5  * National Center for Biotechnology Information
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7  * This software/database is a "United States Government Work" under the
8  * terms of the United States Copyright Act. It was written as part of
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25  *
26  * Author: .......
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28  * File Description:
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30  *
31  * Remark:
32  * This code was originally generated by application DATATOOL
33  * using specifications from the data definition file
34  * 'seqalign.asn'.
35  */
36 
37 #ifndef OBJECTS_SEQALIGN_STD_SEG_HPP
38 #define OBJECTS_SEQALIGN_STD_SEG_HPP
39 
40 
41 // generated includes
43 #include <util/range.hpp>
44 
45 // generated classes
46 
48 
49 BEGIN_objects_SCOPE // namespace ncbi::objects::
50 
51 class CSeq_interval;
52 
54 {
56 public:
57  // constructor
58  CStd_seg(void);
59  // destructor
60  ~CStd_seg(void);
61 
62  // Validators
63  TDim CheckNumRows(void) const;
64  void Validate (bool full_test = false) const;
65 
66  // GetSeqRange
67  TSignedSeqPos GetSeqStart(TDim row) const;
68  TSignedSeqPos GetSeqStop (TDim row) const;
69  CRange<TSignedSeqPos> GetSeqRange(TDim row) const;
70 
71  /// Swap two rows (changing *order*, not content)
72  void SwapRows(TDim row1, TDim row2);
73 
74 
75  /// Offset row's coords
76  void OffsetRow(TDim row, TSignedSeqPos offset);
77 
78  /// @deprecated
79  NCBI_DEPRECATED void RemapToLoc(TDim row,
80  const CSeq_loc& dst_loc,
81  bool ignore_strand = false);
82 
83  CRef<CSeq_loc> CreateRowSeq_loc(TDim row) const;
84 
85 private:
86  // Prohibit copy constructor and assignment operator
89 
90 };
91 
92 
93 
94 /////////////////// CStd_seg inline methods
95 
96 // constructor
97 inline
99 {
100 }
101 
102 
103 /////////////////// end of CStd_seg inline methods
104 
105 
106 END_objects_SCOPE // namespace ncbi::objects::
107 
109 
110 #endif // OBJECTS_SEQALIGN_STD_SEG_HPP
111 /* Original file checksum: lines: 93, chars: 2392, CRC32: 7f149965 */
Data storage class.
CStd_seg_Base –.
Definition: Std_seg_.hpp:79
CStd_seg_Base Tparent
Definition: Std_seg.hpp:55
CStd_seg(const CStd_seg &value)
CStd_seg & operator=(const CStd_seg &value)
CStd_seg(void)
Definition: Std_seg.hpp:98
char value[7]
Definition: config.c:431
int TSignedSeqPos
Type for signed sequence position.
Definition: ncbimisc.hpp:887
#define NCBI_DEPRECATED
#define END_NCBI_SCOPE
End previously defined NCBI scope.
Definition: ncbistl.hpp:103
#define BEGIN_NCBI_SCOPE
Define ncbi namespace.
Definition: ncbistl.hpp:100
#define NCBI_SEQALIGN_EXPORT
Definition: ncbi_export.h:744
int offset
Definition: replacements.h:160
Modified on Sat Mar 02 10:55:50 2024 by modify_doxy.py rev. 669887