Variation_.cpp File Reference

#include <ncbi_pch.hpp>
#include <serial/serialimpl.hpp>
#include <objects/variation/Variation.hpp>
#include <objects/general/Dbtag.hpp>
#include <objects/general/Object_id.hpp>
#include <objects/general/User_object.hpp>
#include <objects/pub/Pub_set.hpp>
#include <objects/seq/Bioseq.hpp>
#include <objects/seqfeat/Phenotype.hpp>
#include <objects/seqfeat/Population_data.hpp>
#include <objects/seqfeat/SubSource.hpp>
#include <objects/seqfeat/VariantProperties.hpp>
#include <objects/seqfeat/Variation_inst.hpp>
#include <objects/variation/VariantPlacement.hpp>
#include <objects/variation/VariationException.hpp>
#include <objects/variation/VariationMethod.hpp>

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Functions
	BEGIN_NAMED_ENUM_IN_INFO ("", CVariation_Base::C_Data::C_Set::, EData_set_type, true)
	BEGIN_NAMED_CLASS_INFO ("", CVariation_Base::C_Data::C_Set)
	BEGIN_NAMED_CHOICE_INFO ("", CVariation_Base::C_Data)
	BEGIN_NAMED_CLASS_INFO ("", CVariation_Base::C_E_Consequence::C_Loss_of_heterozygosity)
	BEGIN_NAMED_CHOICE_INFO ("", CVariation_Base::C_E_Consequence)
	BEGIN_NAMED_CLASS_INFO ("", CVariation_Base::C_Frameshift)
	BEGIN_NAMED_CLASS_INFO ("", CVariation_Base::C_E_Somatic_origin::C_Condition)
	BEGIN_NAMED_CLASS_INFO ("", CVariation_Base::C_E_Somatic_origin)
	BEGIN_NAMED_BASE_CLASS_INFO ("Variation", CVariation)

Function Documentation

BEGIN_NAMED_BASE_CLASS_INFO()

BEGIN_NAMED_BASE_CLASS_INFO	(	"Variation"	,
		CVariation
	)

Definition at line 850 of file Variation_.cpp.

References ADD_NAMED_MEMBER, ADD_NAMED_REF_MEMBER, ADD_NAMED_STD_MEMBER, info, CVariation_Base::m_Clinical_test, CVariation_Base::m_Consequence, CVariation_Base::m_Data, CVariation_Base::m_Description, CVariation_Base::m_Exceptions, CVariation_Base::m_Ext, CVariation_Base::m_Frameshift, CVariation_Base::m_Id, CVariation_Base::m_Method, CVariation_Base::m_Name, CVariation_Base::m_Other_ids, CVariation_Base::m_Parent_id, CVariation_Base::m_Phenotype, CVariation_Base::m_Placements, CVariation_Base::m_Population_data, CVariation_Base::m_Pub, CVariation_Base::m_Sample_id, CVariation_Base::m_set_State, CVariation_Base::m_So_terms, CVariation_Base::m_Somatic_origin, CVariation_Base::m_Synonyms, CVariation_Base::m_Variant_prop, MEMBER_PTR, SET_CLASS_MODULE, and STD.

BEGIN_NAMED_CHOICE_INFO() [1/2]

BEGIN_NAMED_CHOICE_INFO	(	""	,
		CVariation_Base::C_Data
	)

Definition at line 267 of file Variation_.cpp.

References ADD_NAMED_BUF_CHOICE_VARIANT, ADD_NAMED_NULL_CHOICE_VARIANT, ADD_NAMED_REF_CHOICE_VARIANT, info, CVariation_Base::C_Data::m_object, CVariation_Base::C_Data::m_string, SET_CHOICE_MODULE, SET_INTERNAL_NAME, and STD.

BEGIN_NAMED_CHOICE_INFO() [2/2]

BEGIN_NAMED_CHOICE_INFO	(	""	,
		CVariation_Base::C_E_Consequence
	)

Definition at line 450 of file Variation_.cpp.

References ADD_NAMED_BUF_CHOICE_VARIANT, ADD_NAMED_NULL_CHOICE_VARIANT, ADD_NAMED_REF_CHOICE_VARIANT, info, SET_CHOICE_MODULE, SET_INTERNAL_NAME, and STD.

BEGIN_NAMED_CLASS_INFO() [1/5]

BEGIN_NAMED_CLASS_INFO	(	""	,
		CVariation_Base::C_Data::C_Set
	)

Definition at line 101 of file Variation_.cpp.

References ADD_NAMED_ENUM_MEMBER, ADD_NAMED_MEMBER, ADD_NAMED_STD_MEMBER, info, CVariation_Base::m_Name, CVariation_Base::m_set_State, MEMBER_PTR, SET_CLASS_MODULE, and SET_INTERNAL_NAME.

BEGIN_NAMED_CLASS_INFO() [2/5]

BEGIN_NAMED_CLASS_INFO	(	""	,
		CVariation_Base::C_E_Consequence::C_Loss_of_heterozygosity
	)

Definition at line 314 of file Variation_.cpp.

References ADD_NAMED_STD_MEMBER, info, CVariation_Base::m_set_State, MEMBER_PTR, SET_CLASS_MODULE, and SET_INTERNAL_NAME.

BEGIN_NAMED_CLASS_INFO() [3/5]

BEGIN_NAMED_CLASS_INFO	(	""	,
		CVariation_Base::C_E_Somatic_origin
	)

Definition at line 590 of file Variation_.cpp.

References ADD_NAMED_REF_MEMBER, info, SET_CLASS_MODULE, and SET_INTERNAL_NAME.

BEGIN_NAMED_CLASS_INFO() [4/5]

BEGIN_NAMED_CLASS_INFO	(	""	,
		CVariation_Base::C_E_Somatic_origin::C_Condition
	)

Definition at line 526 of file Variation_.cpp.

References ADD_NAMED_MEMBER, ADD_NAMED_STD_MEMBER, info, CVariation_Base::m_Description, CVariation_Base::m_set_State, MEMBER_PTR, SET_CLASS_MODULE, and SET_INTERNAL_NAME.

BEGIN_NAMED_CLASS_INFO() [5/5]

BEGIN_NAMED_CLASS_INFO	(	""	,
		CVariation_Base::C_Frameshift
	)

Definition at line 483 of file Variation_.cpp.

References ADD_NAMED_STD_MEMBER, info, CVariation_Base::m_set_State, MEMBER_PTR, SET_CLASS_MODULE, and SET_INTERNAL_NAME.

BEGIN_NAMED_ENUM_IN_INFO()

BEGIN_NAMED_ENUM_IN_INFO	(	""	,
		CVariation_Base::C_Data::C_Set::	,
		EData_set_type	,
		true
	)

Definition at line 63 of file Variation_.cpp.

References ADD_ENUM_VALUE, SET_ENUM_INTERNAL_NAME, and SET_ENUM_MODULE.