NCBI C++ ToolKit
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#include <ncbi_pch.hpp>
#include <util/range.hpp>
#include <util/stream_source.hpp>
#include <objects/seqalign/Score_set.hpp>
#include <objects/seqalign/Score.hpp>
#include <objects/general/Object_id.hpp>
#include <objects/seqalign/Product_pos.hpp>
#include <objects/seqalign/Spliced_seg.hpp>
#include <objects/seqalign/Spliced_exon.hpp>
#include <objects/seqalign/Spliced_exon_chunk.hpp>
#include <objects/seq/Annot_descr.hpp>
#include <objects/seq/Annotdesc.hpp>
#include <objects/seq/Align_def.hpp>
#include <objmgr/seq_vector.hpp>
#include <objmgr/util/sequence.hpp>
#include <algo/sequence/align_cleanup.hpp>
#include <algo/align/util/score_builder.hpp>
#include <algo/align/util/genomic_compart.hpp>
#include <algo/align/util/best_placement.hpp>
#include <algo/align/splign/splign_formatter.hpp>
#include <algo/align/splign/splign_cmdargs.hpp>
#include <algo/align/advanced_cleanup/advanced_cleanup.hpp>
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Classes | |
struct | SAlignSortByQueryId |
class | COrderByQueryStart |
Functions | |
USING_SCOPE (objects) | |
Variables | |
const size_t | kMaxIntron = 2000000 |
USING_SCOPE | ( | objects | ) |
const size_t kMaxIntron = 2000000 |
Definition at line 62 of file advanced_cleanup.cpp.
Referenced by CAdvancedAlignCleanup::SetParams().