NCBI C++ ToolKit
Classes | Functions | Variables
advanced_cleanup.cpp File Reference
#include <ncbi_pch.hpp>
#include <util/range.hpp>
#include <util/stream_source.hpp>
#include <objects/seqalign/Score_set.hpp>
#include <objects/seqalign/Score.hpp>
#include <objects/general/Object_id.hpp>
#include <objects/seqalign/Product_pos.hpp>
#include <objects/seqalign/Spliced_seg.hpp>
#include <objects/seqalign/Spliced_exon.hpp>
#include <objects/seqalign/Spliced_exon_chunk.hpp>
#include <objects/seq/Annot_descr.hpp>
#include <objects/seq/Annotdesc.hpp>
#include <objects/seq/Align_def.hpp>
#include <objmgr/seq_vector.hpp>
#include <objmgr/util/sequence.hpp>
#include <algo/sequence/align_cleanup.hpp>
#include <algo/align/util/score_builder.hpp>
#include <algo/align/util/genomic_compart.hpp>
#include <algo/align/util/best_placement.hpp>
#include <algo/align/splign/splign_formatter.hpp>
#include <algo/align/splign/splign_cmdargs.hpp>
#include <algo/align/advanced_cleanup/advanced_cleanup.hpp>
+ Include dependency graph for advanced_cleanup.cpp:

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Classes

struct  SAlignSortByQueryId
 
class  COrderByQueryStart
 

Functions

 USING_SCOPE (objects)
 

Variables

const size_t kMaxIntron = 2000000
 

Function Documentation

◆ USING_SCOPE()

USING_SCOPE ( objects  )

Variable Documentation

◆ kMaxIntron

const size_t kMaxIntron = 2000000

Definition at line 62 of file advanced_cleanup.cpp.

Referenced by CAdvancedAlignCleanup::SetParams().

Modified on Mon Feb 26 04:00:52 2024 by modify_doxy.py rev. 669887