NCBI C++ ToolKit
Functions
agp_read.cpp File Reference
#include <ncbi_pch.hpp>
#include <objtools/readers/agp_read.hpp>
#include <objtools/readers/reader_exception.hpp>
#include <objects/seqloc/Seq_interval.hpp>
#include <objects/seqloc/Seq_loc.hpp>
#include <objects/seqset/Seq_entry.hpp>
#include <objects/seq/Delta_seq.hpp>
#include <objects/seq/Seq_inst.hpp>
#include <objects/seq/Seq_literal.hpp>
#include <objects/seq/Seq_ext.hpp>
#include <objects/seq/Delta_ext.hpp>
#include <objects/seq/Seq_data.hpp>
#include <objects/seq/Seq_gap.hpp>
#include <objects/general/Object_id.hpp>
+ Include dependency graph for agp_read.cpp:

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Functions

 USING_SCOPE (objects)
 
CRef< CBioseq_setAgpRead (CNcbiIstream &is, EAgpRead_IdRule component_id_rule, bool set_gap_data, vector< vector< char > > *component_types)
 
void AgpRead (CNcbiIstream &is, vector< CRef< CSeq_entry > > &entries, EAgpRead_IdRule component_id_rule, bool set_gap_data, vector< vector< char > > *component_types)
 
void AgpRead (CNcbiIstream &is, vector< CRef< CBioseq > > &bioseqs, EAgpRead_IdRule component_id_rule, bool set_gap_data, vector< vector< char > > *component_types)
 

Function Documentation

◆ AgpRead() [1/3]

CRef<CBioseq_set> AgpRead ( CNcbiIstream is,
EAgpRead_IdRule  component_id_rule,
bool  set_gap_data,
vector< vector< char > > *  component_types 
)

Definition at line 52 of file agp_read.cpp.

References entries, ITERATE, and CBioseq_set_Base::SetSeq_set().

Referenced by AgpRead().

◆ AgpRead() [2/3]

void AgpRead ( CNcbiIstream is,
vector< CRef< CBioseq > > &  bioseqs,
EAgpRead_IdRule  component_id_rule,
bool  set_gap_data,
vector< vector< char > > *  component_types 
)

◆ AgpRead() [3/3]

void AgpRead ( CNcbiIstream is,
vector< CRef< CSeq_entry > > &  entries,
EAgpRead_IdRule  component_id_rule,
bool  set_gap_data,
vector< vector< char > > *  component_types 
)

Definition at line 67 of file agp_read.cpp.

References AgpRead(), entries, NON_CONST_ITERATE, and CSeq_entry_Base::SetSeq().

◆ USING_SCOPE()

USING_SCOPE ( objects  )
Modified on Tue Apr 23 07:40:42 2024 by modify_doxy.py rev. 669887