NCBI C++ ToolKit
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#include <ncbi_pch.hpp>
#include <corelib/ncbiapp.hpp>
#include <corelib/ncbienv.hpp>
#include <corelib/ncbiargs.hpp>
#include <corelib/ncbifile.hpp>
#include <objtools/readers/agp_converter.hpp>
#include <serial/serial.hpp>
#include <serial/objostr.hpp>
#include <serial/objistr.hpp>
#include <objects/general/Object_id.hpp>
#include <objects/general/Date.hpp>
#include <objects/seqset/Seq_entry.hpp>
#include <objects/seqset/Bioseq_set.hpp>
#include <objects/seqloc/Seq_id.hpp>
#include <objtools/readers/fasta.hpp>
#include <objects/seq/Bioseq.hpp>
#include <objects/seq/Seq_inst.hpp>
#include <objects/seq/Seqdesc.hpp>
#include <objtools/readers/agp_seq_entry.hpp>
#include <objects/seq/Seq_literal.hpp>
#include <objects/seq/Seq_descr.hpp>
#include <objects/seq/Seq_ext.hpp>
#include <objects/seq/Delta_seq.hpp>
#include <objects/seq/Delta_ext.hpp>
#include <objects/general/Int_fuzz.hpp>
#include <objects/seqloc/Seq_loc.hpp>
#include <objects/seqloc/Seq_interval.hpp>
#include <objects/seqfeat/SubSource.hpp>
#include <objects/seqfeat/BioSource.hpp>
#include <corelib/ncbitime.hpp>
#include <corelib/ncbiexec.hpp>
#include <objects/submit/Seq_submit.hpp>
#include <objects/submit/Submit_block.hpp>
#include <objects/general/Dbtag.hpp>
#include <objects/seqfeat/Org_ref.hpp>
#include <objects/seqfeat/OrgMod.hpp>
#include <objects/seqfeat/OrgName.hpp>
#include <objects/taxon1/taxon1.hpp>
#include <objects/pub/Pub.hpp>
#include <objects/biblio/Cit_sub.hpp>
#include <objects/seq/Pubdesc.hpp>
#include <objects/pub/Pub_equiv.hpp>
#include <objects/misc/sequence_macros.hpp>
#include <objmgr/scope.hpp>
#include <objtools/data_loaders/genbank/gbloader.hpp>
#include <util/xregexp/regexp.hpp>
#include <util/format_guess.hpp>
#include <algorithm>
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Classes | |
class | CAgpconvertApplication |
class | CAgpconvertApplication::CCustomErrorHandler |
class | CAgpconvertApplication::CAsnvalRunner |
struct | SIsOldName |
Functions | |
USING_SCOPE (objects) | |
static TTaxId | s_GetTaxid (const COrg_ref &org_ref) |
int | main (int argc, const char *argv[]) |
Variables | |
USING_NCBI_SCOPE | |
Definition at line 885 of file agpconvert.cpp.
References CAgpconvertApplication::CAgpconvertApplication(), and eDS_Default.
Definition at line 294 of file agpconvert.cpp.
References count, COrg_ref_Base::GetDb(), NStr::IntToString(), ITERATE, TAX_ID_FROM, and ZERO_TAX_ID.
Referenced by CAgpconvertApplication::x_HandleTaxArgs().
USING_SCOPE | ( | objects | ) |
USING_NCBI_SCOPE |
Definition at line 90 of file agpconvert.cpp.