#include <gui/widgets/seq_graphic/graph_cache.hpp>
#include <gui/widgets/seq_graphic/sparse_graph.hpp>
#include <gui/widgets/seq_graphic/seqgraphic_job.hpp>
#include <gui/widgets/seq_graphic/alignment_glyph.hpp>
#include <gui/widgets/seq_graphic/feature_sorter.hpp>
#include <gui/widgets/seq_graphic/seqgraphic_job_result.hpp>
#include <gui/widgets/seq_graphic/alignment_score.hpp>
#include <gui/widgets/seq_graphic/alignment_conf.hpp>
#include <gui/gui.hpp>
#include <gui/widgets/seq_graphic/layout_policy.hpp>
#include <gui/widgets/seq_graphic/align_statistics_glyph.hpp>

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Classes
class	CSGAlignmentJob

class	CSGAlignScoringJob
	CSGAlignScoreJob. More...

class	CGraphStatCollector
	CGraphStatCollector Helper class to use with CSGAlignStatJob::x_CollectAlignStats x_CollectAlignStats reads alignments pileups and stores them into either CAlignmentGraph or CAlnStatGlyph::TStatVec using the corresponding descendant of CGraphStatCollector. More...

class	CSGAlignStatJob
	CSGAlignStatJob. More...

Typedefs
typedef pair< CRef< IAlnGraphicDataSource >, int >	TAlnDS_Anchor
	CSGAlignmentJob. More...

typedef vector< TAlnDS_Anchor >	TAlnDataSources

Functions
void	BuildAlignDataSource (objects::CBioseq_Handle &handle, vector< objects::CSeq_align::TDim > &anchors, const objects::CSeq_align &align, bool sparseAln, TModelUnit window, TAlnDataSources &aln_datasources, CRange< TSeqPos > *range=nullptr)

void	GetAnchors (objects::CBioseq_Handle &handle, const objects::CSynonymsSet *synonyms, const objects::CSeq_align &align, vector< objects::CSeq_align::TDim > &anchors)

Typedef Documentation

◆ TAlnDataSources

typedef vector<TAlnDS_Anchor> TAlnDataSources

Definition at line 60 of file alignment_job.hpp.

◆ TAlnDS_Anchor

typedef pair<CRef<IAlnGraphicDataSource>, int> TAlnDS_Anchor

CSGAlignmentJob.

Definition at line 59 of file alignment_job.hpp.

Function Documentation

◆ BuildAlignDataSource()

void BuildAlignDataSource	(	objects::CBioseq_Handle &	handle,
		vector< objects::CSeq_align::TDim > &	anchors,
		const objects::CSeq_align &	align,
		bool	sparseAln,
		TModelUnit	window,
		TAlnDataSources &	aln_datasources,
		CRange< TSeqPos > *	range = `nullptr`
	)

◆ GetAnchors()

void GetAnchors	(	objects::CBioseq_Handle &	handle,
		const objects::CSynonymsSet *	synonyms,
		const objects::CSeq_align &	align,
		vector< objects::CSeq_align::TDim > &	anchors
	)

Classes