aln_scanner_phylip.hpp

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#ifndef _ALN_SCANNER_PHYLIP_HPP_
#define _ALN_SCANNER_PHYLIP_HPP_
 
/*
 * $Id: aln_scanner_phylip.hpp 86102 2019-04-09 12:15:26Z ludwigf $
 *
 * ===========================================================================
 *
 *                            PUBLIC DOMAIN NOTICE
 *               National Center for Biotechnology Information
 *
 *  This software/database is a "United States Government Work" under the
 *  terms of the United States Copyright Act.  It was written as part of
 *  the author's official duties as a United States Government employee and
 *  thus cannot be copyrighted.  This software/database is freely available
 *  to the public for use. The National Library of Medicine and the U.S.
 *  Government have not placed any restriction on its use or reproduction.
 *
 *  Although all reasonable efforts have been taken to ensure the accuracy
 *  and reliability of the software and data, the NLM and the U.S.
 *  Government do not and cannot warrant the performance or results that
 *  may be obtained by using this software or data. The NLM and the U.S.
 *  Government disclaim all warranties, express or implied, including
 *  warranties of performance, merchantability or fitness for any particular
 *  purpose.
 *
 *  Please cite the author in any work or product based on this material.
 *
 * ===========================================================================
 *
 * Authors: Frank Ludwig
 *
 */
#include <corelib/ncbistd.hpp>
#include "aln_scanner.hpp"
 
BEGIN_NCBI_SCOPE
BEGIN_SCOPE(objects);
 
//  ============================================================================
class CAlnScannerPhylip:
    public CAlnScanner
//  ============================================================================
{
public:
    CAlnScannerPhylip():
        mSequenceCount(0),
        mSequenceLength(0) {};
 
    ~CAlnScannerPhylip() {};
 
protected:
    void
    xImportAlignmentData(
        CSequenceInfo&,
        CLineInput&) override;
 
    virtual void
    xVerifyAlignmentData(
        const CSequenceInfo&) override;
 
    int mSequenceCount;
    int mSequenceLength;
};
 
END_SCOPE(objects)
END_NCBI_SCOPE
 
#endif // ALN_SCANNER_PHYLIP