#include <ncbi_pch.hpp>#include <objects/seqalign/Seq_align.hpp>#include <objects/seqalign/Dense_seg.hpp>#include <objects/seqalign/Spliced_seg.hpp>#include <objects/seqalign/Spliced_exon.hpp>#include <objects/seqalign/Sparse_seg.hpp>#include <objects/seqalign/Sparse_align.hpp>#include <objects/seqalign/Product_pos.hpp>#include <objects/seqalign/Prot_pos.hpp>#include <objects/seqalign/Spliced_exon_chunk.hpp>#include <objects/general/Object_id.hpp>#include <objects/seq/seq_id_handle.hpp>#include <objmgr/scope.hpp>#include <objmgr/bioseq_handle.hpp>#include <objmgr/seq_vector.hpp>#include <objmgr/util/sequence.hpp>#include <objtools/writers/writer_exception.hpp>#include <objtools/writers/write_util.hpp>#include <objtools/writers/aln_writer.hpp>#include <util/sequtil/sequtil_manip.hpp>
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Functions | |
| USING_SCOPE (objects) | |
| unsigned int | s_ProductLength (const CProduct_pos &start, const CProduct_pos &end) |
Function Documentation
◆ s_ProductLength()
| unsigned int s_ProductLength | ( | const CProduct_pos & | start, |
| const CProduct_pos & | end | ||
| ) |
Definition at line 246 of file aln_writer.cpp.
References CProduct_pos::AsSeqPos(), CProduct_pos_Base::e_not_set, NCBI_THROW, and CProduct_pos_Base::Which().
◆ USING_SCOPE()
| USING_SCOPE | ( | objects | ) |
